# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	3.85e-11		
1gg1A	350	2.400	c.1.10.4	29187
1of8A	370	4.094	c.1.10.4	92819
2rghA	571	4.165		
1fsuA	492	8.567	c.76.1.2	35032
1n8fA	350	9.727	c.1.10.4	85397
2rp4A	76	9.844		
2b9kA	47	16.39		
1t4nA	94	17.11	d.50.1.1	106424
1wocA	103	18.26		
2pr3B	51	18.85		
1h9oA	112	19.18	d.93.1.1	60837
1fnsA	196	24.12	c.62.1.1	34136
1x47A	98	25.05	d.50.1.1	121680
3ci0I	89	30.82		
2f20A	240	30.96	d.303.1.1	132791
2icuA	229	30.99		
2fafA	608	33.35		
2qztA	111	34.91		
2p3uA	52	35.12		
1kwmA	402	36.11	c.56.5.1,d.58.3.1	73079,73080
3b5lB	198	43.15		
2iccA	119	44.94		
1nlqA	108	45.95	b.121.3.1	85853
2bbeA	108	48.50		
1txnA	328	49.50	d.248.1.1	112779
2fa1A	160	49.74	d.190.1.2	133182
1zotA	358	51.81		
2vgdA	218	52.74		
1zn6A	227	54.24	d.303.1.1	125373
1ijbA	202	57.29	c.62.1.1	71229
1x7vA	99	58.23	d.58.4.11	109501
1wxcB	134	59.75		
1h1aA	191	60.65	b.29.1.11	83450
1tk1A	260	65.96	d.248.1.1	107066
2dcyA	185	67.02	b.29.1.11	131388
2oxaA	600	68.79		
1fjsL	52	69.76	g.3.11.1	44226
1k5jA	124	70.16	b.121.3.1	68201
2nqlA	388	70.89		
2burA	209	73.83	b.3.6.1	129227
2a8eA	220	78.80	d.296.1.1	126397
1gxjA	186	78.98	d.215.1.1	70707
1t3lA	337	79.32	b.34.2.1,c.37.1.1	106358,106359
2gz6A	388	80.73		
2q8pA	260	84.41		
1yd0A	96	85.69		
1tr7A	164	86.83	b.2.3.2	119328
1wmvA	54	88.27		
1eo9A	209	89.91	b.3.6.1	22731