# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	4.03e-12		
1fsuA	492	1.510	c.76.1.2	35032
2rghA	571	1.536		
1gg1A	350	3.145	c.1.10.4	29187
1of8A	370	5.391	c.1.10.4	92819
2p3uA	52	6.096		
1n8fA	350	10.66	c.1.10.4	85397
2pr3B	51	11.02		
1fnsA	196	15.56	c.62.1.1	34136
2fa1A	160	15.71	d.190.1.2	133182
1wocA	103	16.37		
2fafA	608	19.93		
1z6eB	52	20.55	g.3.11.1	124519
1fjsL	52	22.26	g.3.11.1	44226
2qztA	111	22.69		
2qmlA	198	22.74		
2b9kA	47	23.20		
1wl7A	312	24.85	b.67.2.1	120996
3buxB	329	26.49		
2prbA	196	27.08		
1zn6A	227	28.51	d.303.1.1	125373
1h9oA	112	29.67	d.93.1.1	60837
1ijbA	202	29.74	c.62.1.1	71229
2f20A	240	32.67	d.303.1.1	132791
1zotA	358	35.89		
1widA	130	36.48	b.142.1.2	114667
2bz6L	53	37.69	g.3.11.1	129553
1yd0A	96	38.25		
1t3oA	95	38.72		
2gz6A	388	38.90		
3ci0I	89	39.56		
1m93C	41	40.26		
2ac1A	541	40.44		
2z5aB	420	42.65		
2rp4A	76	43.39		
2i7fA	108	43.96		
2burA	209	49.84	b.3.6.1	129227
3bdqA	110	51.46		
1tqzA	133	53.00	b.55.1.11	119327
1kwmA	402	54.45	c.56.5.1,d.58.3.1	73079,73080
3cnvA	162	55.24		
1t4nA	94	55.74	d.50.1.1	106424
1yvhA	329	55.88	a.39.1.7,a.48.1.1,d.93.1.1	124096,124097,124098
1v58A	241	55.95	c.47.1.9,d.17.3.1	108371,108372
1pcfA	66	56.41	d.18.1.1	38142
2ooiA	162	56.57		
1i7pA	274	57.74	b.43.4.2,c.25.1.1	66048,66049
2bokL	55	59.22	g.3.11.1	128917
1gxjA	186	59.58	d.215.1.1	70707
2icuA	229	62.04		
1i3zA	103	63.70	d.93.1.1	83667
2g8jA	339	64.53	d.3.1.3	134773
1eo9A	209	66.09	b.3.6.1	22731
1nlqA	108	67.76	b.121.3.1	85853
3b5lB	198	72.32		
1ndh	272	72.96		
1uypA	432	73.96	b.29.1.19,b.67.2.3	100176,100177
1gyhA	318	74.29	b.67.2.1	70757
1zxfA	155	74.62	d.129.3.5	125771
1wmvA	54	75.40		
2p19A	149	75.90		
1uv4A	293	77.14	b.67.2.1	119705
1dtdA	303	77.27	c.56.5.1	33823
1zjkA	403	78.25	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1ur1A	378	81.11	c.1.8.3	99804
1q1oA	98	81.35	d.15.2.2	95596
2a8eA	220	81.89	d.296.1.1	126397
1wd5A	208	82.33	c.61.1.1	114524
3bwgA	239	82.80		
1dssG	333	82.89	c.2.1.3,d.81.1.1	30022,39937
2cblA	305	83.02	a.39.1.7,a.48.1.1,d.93.1.1	17380,17774,40528
1tg0A	68	83.32		
1kliL	69	83.89	g.3.11.1	77436
3nulA	130	86.67	d.110.1.1	40891
1u8fO	335	87.77	c.2.1.3,d.81.1.1	119626,119627
1qxrA	189	88.59	b.82.1.7	96552
1r17A	343	89.06	b.2.3.4,b.2.3.4	96796,96797
2p5qA	170	89.07