# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	3.37e-11		
2rghA	571	1.794		
1gg1A	350	7.909	c.1.10.4	29187
2pr3B	51	10.07		
2p3uA	52	10.13		
1z6eB	52	13.81	g.3.11.1	124519
2f20A	240	14.12	d.303.1.1	132791
2qztA	111	14.57		
1t4nA	94	15.53	d.50.1.1	106424
1fsuA	492	15.70	c.76.1.2	35032
1fnsA	196	17.16	c.62.1.1	34136
2gz6A	388	17.22		
2a8eA	220	18.43	d.296.1.1	126397
1yd0A	96	19.18		
1wocA	103	19.40		
1fjsL	52	19.74	g.3.11.1	44226
2iccA	119	23.69		
2b9kA	47	24.74		
1wl7A	312	26.54	b.67.2.1	120996
3ci0I	89	28.75		
2prbA	196	34.23		
3bdqA	110	34.91		
1ijbA	202	35.43	c.62.1.1	71229
1acfA	125	37.39	d.110.1.1	40882
2bz6L	53	38.21	g.3.11.1	129553
1of8A	370	38.43	c.1.10.4	92819
2bokL	55	39.45	g.3.11.1	128917
1v58A	241	42.03	c.47.1.9,d.17.3.1	108371,108372
1zn6A	227	42.11	d.303.1.1	125373
2q8pA	260	42.39		
1h9oA	112	43.36	d.93.1.1	60837
1q8bA	105	43.44	d.58.4.6	96201
2fafA	608	44.37		
2bbeA	108	44.73		
2qmlA	198	45.51		
3buxB	329	50.34		
2eaqA	90	52.11		
1kwmA	402	54.92	c.56.5.1,d.58.3.1	73079,73080
2fa1A	160	54.95	d.190.1.2	133182
2nqlA	388	54.97		
1acf	125	55.51		
2z5aB	420	55.84		
1kliL	69	56.20	g.3.11.1	77436
1fp3A	402	57.15	a.102.1.3	18842
2oggA	152	58.09		
1nlqA	108	58.94	b.121.3.1	85853
1tk1A	260	63.17	d.248.1.1	107066
2bhvA	246	63.93		
1gxjA	186	66.37	d.215.1.1	70707
2rp4A	76	66.69		
1gyhA	318	68.33	b.67.2.1	70757
1widA	130	69.28	b.142.1.2	114667
1obdA	306	69.39	d.143.1.1	86767
2fb0A	94	69.53		
1tr7A	164	69.92	b.2.3.2	119328
1x7vA	99	70.31	d.58.4.11	109501
1wxcB	134	73.11		
1t4oA	117	76.07	d.50.1.1	106425
1ywmA	200	76.39		
1l1qA	186	77.07	c.61.1.1	77653
1tg0A	68	81.72		
3nulA	130	81.78	d.110.1.1	40891
2rg8A	165	83.65		
2zdiC	151	86.30		
2p5qA	170	86.65		
1zotA	358	86.93		
1n8fA	350	87.08	c.1.10.4	85397