# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	3.58e-10		
2rghA	571	2.709		
1gg1A	350	14.63	c.1.10.4	29187
2pr3B	51	15.11		
1fsuA	492	15.52	c.76.1.2	35032
2p3uA	52	15.54		
1yd0A	96	18.27		
2gz6A	388	18.86		
1fnsA	196	19.41	c.62.1.1	34136
2a8eA	220	22.83	d.296.1.1	126397
2f20A	240	23.90	d.303.1.1	132791
1t4nA	94	25.21	d.50.1.1	106424
1z6eB	52	27.77	g.3.11.1	124519
2b9kA	47	30.07		
1of8A	370	30.92	c.1.10.4	92819
1fjsL	52	31.49	g.3.11.1	44226
3ci0I	89	33.99		
2prbA	196	36.14		
2qztA	111	36.64		
2rp4A	76	40.59		
2nqlA	388	42.67		
1wocA	103	43.69		
1ijbA	202	44.01	c.62.1.1	71229
2bokL	55	44.89	g.3.11.1	128917
3buxB	329	49.09		
1nlqA	108	50.60	b.121.3.1	85853
2oxaA	600	56.11		
1q8bA	105	60.03	d.58.4.6	96201
1v58A	241	60.12	c.47.1.9,d.17.3.1	108371,108372
2bbeA	108	60.12		
1k5jA	124	60.59	b.121.3.1	68201
1h9oA	112	61.23	d.93.1.1	60837
1gxjA	186	64.47	d.215.1.1	70707
1tr7A	164	65.56	b.2.3.2	119328
2qmlA	198	66.03		
2q8pA	260	67.39		
2icuA	229	68.28		
1tk1A	260	68.40	d.248.1.1	107066
2icgA	160	72.47		
1fp3A	402	78.63	a.102.1.3	18842
2fa1A	160	79.38	d.190.1.2	133182
1x7vA	99	80.39	d.58.4.11	109501
1widA	130	81.43	b.142.1.2	114667
2bz6L	53	83.69	g.3.11.1	129553
1xe0A	114	83.98	b.121.3.1	115197
1kwmA	402	86.00	c.56.5.1,d.58.3.1	73079,73080
1l1qA	186	89.49	c.61.1.1	77653