# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.50e-10		
2rghA	571	3.388		
1gg1A	350	10.89	c.1.10.4	29187
1fsuA	492	12.99	c.76.1.2	35032
2pr3B	51	15.06		
2p3uA	52	18.61		
1fnsA	196	21.39	c.62.1.1	34136
2gz6A	388	21.55		
1yd0A	96	21.85		
2a8eA	220	23.19	d.296.1.1	126397
1t4nA	94	24.55	d.50.1.1	106424
1of8A	370	24.62	c.1.10.4	92819
1wocA	103	27.80		
2f20A	240	34.03	d.303.1.1	132791
2qztA	111	37.14		
2rp4A	76	37.43		
1z6eB	52	39.68	g.3.11.1	124519
3ci0I	89	40.36		
1h9oA	112	43.75	d.93.1.1	60837
1fjsL	52	44.87	g.3.11.1	44226
2b9kA	47	45.43		
1tk1A	260	46.21	d.248.1.1	107066
2icgA	160	50.99		
1ijbA	202	52.63	c.62.1.1	71229
2q8pA	260	53.31		
1nlqA	108	54.54	b.121.3.1	85853
2bokL	55	54.80	g.3.11.1	128917
2oxaA	600	55.47		
3buxB	329	59.70		
2iccA	119	59.72		
2bbeA	108	60.00		
1q8bA	105	63.53	d.58.4.6	96201
1gxjA	186	63.98	d.215.1.1	70707
1kwmA	402	69.23	c.56.5.1,d.58.3.1	73079,73080
1tr7A	164	69.55	b.2.3.2	119328
1zn6A	227	70.11	d.303.1.1	125373
1v58A	241	71.96	c.47.1.9,d.17.3.1	108371,108372
1x7vA	99	72.84	d.58.4.11	109501
2icuA	229	74.48		
1k5jA	124	75.53	b.121.3.1	68201
2prbA	196	78.19		
2nqlA	388	79.42		
1txnA	328	79.75	d.248.1.1	112779
1h1aA	191	82.46	b.29.1.11	83450
1n8fA	350	86.03	c.1.10.4	85397
2bhvA	246	86.61		
2af4C	333	86.70	c.77.1.5	126656
1fp3A	402	87.80	a.102.1.3	18842
2vgdA	218	89.70