# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	5.89e-10		
2rghA	571	3.359		
1gg1A	350	9.509	c.1.10.4	29187
1fsuA	492	10.40	c.76.1.2	35032
1of8A	370	16.72	c.1.10.4	92819
2iccA	119	16.96		
2rp4A	76	19.17		
1fnsA	196	20.72	c.62.1.1	34136
2qztA	111	21.70		
1wocA	103	22.31		
2p3uA	52	22.41		
2pr3B	51	22.58		
1yd0A	96	23.21		
2b9kA	47	26.52		
1t4nA	94	27.01	d.50.1.1	106424
2qmlA	198	33.38		
1wl7A	312	35.40	b.67.2.1	120996
2a8eA	220	38.29	d.296.1.1	126397
1n8fA	350	39.37	c.1.10.4	85397
1ijbA	202	39.51	c.62.1.1	71229
1fjsL	52	39.97	g.3.11.1	44226
1z6eB	52	40.96	g.3.11.1	124519
2prbA	196	41.65		
3bdqA	110	43.39		
2fa1A	160	43.78	d.190.1.2	133182
1pz4A	116	44.41	d.106.1.1	95400
1h9oA	112	45.38	d.93.1.1	60837
2gz6A	388	46.79		
3ci0I	89	47.90		
2f20A	240	48.24	d.303.1.1	132791
1tg0A	68	56.57		
2bz6L	53	58.67	g.3.11.1	129553
1m93C	41	59.87		
2q8pA	260	60.79		
1kwmA	402	66.22	c.56.5.1,d.58.3.1	73079,73080
1mf7A	194	66.44	c.62.1.1	84937
2p19A	149	67.80		
1nlqA	108	71.43	b.121.3.1	85853
2oxaA	600	71.52		
2bhvA	246	73.35		
2fafA	608	73.54		
1t3lA	337	77.88	b.34.2.1,c.37.1.1	106358,106359
3buxB	329	80.63		
1tk1A	260	81.52	d.248.1.1	107066
2p5qA	170	81.58		
1tr7A	164	81.75	b.2.3.2	119328
1t4oA	117	81.93	d.50.1.1	106425
1ur1A	378	86.52	c.1.8.3	99804
1pt6A	213	87.94	c.62.1.1	95091
1widA	130	88.83	b.142.1.2	114667