# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	8.18e-11		
2rghA	571	4.049		
1gg1A	350	7.995	c.1.10.4	29187
2b9kA	47	9.702		
1fsuA	492	9.97	c.76.1.2	35032
2pr3B	51	12.10		
2rp4A	76	13.24		
1of8A	370	15.62	c.1.10.4	92819
2p3uA	52	16.23		
1fnsA	196	16.29	c.62.1.1	34136
1t4nA	94	21.12	d.50.1.1	106424
1fjsL	52	22.06	g.3.11.1	44226
1z6eB	52	25.14	g.3.11.1	124519
2a8eA	220	27.20	d.296.1.1	126397
2bokL	55	33.26	g.3.11.1	128917
1h9oA	112	35.67	d.93.1.1	60837
1ijbA	202	40.11	c.62.1.1	71229
2qztA	111	41.38		
3ci0I	89	41.92		
1nlqA	108	43.63	b.121.3.1	85853
1wocA	103	43.97		
2bz6L	53	46.01	g.3.11.1	129553
1mf7A	194	47.10	c.62.1.1	84937
1yd0A	96	48.96		
2qmlA	198	51.99		
3buxB	329	52.49		
2f20A	240	53.65	d.303.1.1	132791
2burA	209	56.35	b.3.6.1	129227
1tk1A	260	57.64	d.248.1.1	107066
1n8fA	350	58.17	c.1.10.4	85397
2fa1A	160	58.54	d.190.1.2	133182
2icuA	229	59.68		
1kliL	69	60.28	g.3.11.1	77436
2gz6A	388	61.29		
2bbeA	108	61.34		
2iccA	119	61.68		
1x47A	98	64.25	d.50.1.1	121680
1tr7A	164	64.95	b.2.3.2	119328
1k5jA	124	66.79	b.121.3.1	68201
1zn6A	227	66.91	d.303.1.1	125373
2fafA	608	68.05		
2q8pA	260	68.59		
1x7vA	99	68.86	d.58.4.11	109501
2icgA	160	71.63		
2prbA	196	72.80		
2oxaA	600	72.90		
2nqlA	388	76.17		
1pt6A	213	76.31	c.62.1.1	95091
1n3yA	198	83.25	c.62.1.1	79976
1txnA	328	84.81	d.248.1.1	112779
1kwmA	402	89.66	c.56.5.1,d.58.3.1	73079,73080