# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.68e-10		
2rghA	571	3.396		
2pr3B	51	6.830		
1fsuA	492	9.417	c.76.1.2	35032
2p3uA	52	10.25		
1gg1A	350	11.29	c.1.10.4	29187
1fjsL	52	15.86	g.3.11.1	44226
1z6eB	52	18.52	g.3.11.1	124519
2b9kA	47	19.03		
1fnsA	196	23.33	c.62.1.1	34136
2rp4A	76	23.48		
1of8A	370	25.79	c.1.10.4	92819
2bokL	55	26.04	g.3.11.1	128917
2gz6A	388	29.96		
2fafA	608	30.90		
1yd0A	96	34.25		
1t4nA	94	34.34	d.50.1.1	106424
2qztA	111	38.61		
2prbA	196	40.82		
1wocA	103	41.47		
1h9oA	112	41.79	d.93.1.1	60837
1nlqA	108	44.75	b.121.3.1	85853
1ijbA	202	47.66	c.62.1.1	71229
3ci0I	89	50.49		
2fa1A	160	53.38	d.190.1.2	133182
1zn6A	227	63.22	d.303.1.1	125373
2bz6L	53	64.21	g.3.11.1	129553
1zxfA	155	67.69	d.129.3.5	125771
1tr7A	164	68.29	b.2.3.2	119328
3buxB	329	69.88		
2icuA	229	70.77		
2oxaA	600	72.05		
2qmlA	198	72.25		
1kwmA	402	72.69	c.56.5.1,d.58.3.1	73079,73080
1n8fA	350	72.72	c.1.10.4	85397
2z5aB	420	75.30		
2a8eA	220	77.46	d.296.1.1	126397
1ur1A	378	81.47	c.1.8.3	99804
1gxjA	186	82.65	d.215.1.1	70707
2q8pA	260	83.78		
1t3oA	95	84.43		
2burA	209	86.15	b.3.6.1	129227
2f20A	240	87.06	d.303.1.1	132791