# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	4.10e-11		
2rghA	571	2.629		
1gg1A	350	9.105	c.1.10.4	29187
2p3uA	52	9.578		
2pr3B	51	9.579		
1fsuA	492	10.16	c.76.1.2	35032
1fnsA	196	11.65	c.62.1.1	34136
2b9kA	47	12.63		
1z6eB	52	14.21	g.3.11.1	124519
1fjsL	52	14.55	g.3.11.1	44226
1of8A	370	16.14	c.1.10.4	92819
2bz6L	53	18.52	g.3.11.1	129553
2bokL	55	19.44	g.3.11.1	128917
2rp4A	76	21.98		
1yd0A	96	22.89		
2qztA	111	23.65		
1ijbA	202	23.95	c.62.1.1	71229
1kliL	69	25.84	g.3.11.1	77436
2icgA	160	30.86		
2gz6A	388	31.45		
1h9oA	112	32.81	d.93.1.1	60837
1t4nA	94	33.26	d.50.1.1	106424
2a8eA	220	38.60	d.296.1.1	126397
1wocA	103	39.32		
2ac1A	541	46.43		
2prbA	196	46.47		
2fa1A	160	47.29	d.190.1.2	133182
2oxaA	600	48.30		
2z5aB	420	48.82		
1zxfA	155	49.23	d.129.3.5	125771
3ci0I	89	49.41		
1kwmA	402	50.16	c.56.5.1,d.58.3.1	73079,73080
2f20A	240	52.71	d.303.1.1	132791
1zn6A	227	60.20	d.303.1.1	125373
1n8fA	350	65.43	c.1.10.4	85397
2fafA	608	65.95		
1mf7A	194	67.71	c.62.1.1	84937
2icuA	229	72.25		
1pt6A	213	74.53	c.62.1.1	95091
1tr7A	164	79.15	b.2.3.2	119328
1atzA	189	79.38	c.62.1.1	34132
1nlqA	108	80.60	b.121.3.1	85853
1h6fA	193	83.31	b.2.5.4	70901
2bbeA	108	84.71		
2iccA	119	87.03		
3buxB	329	87.51		
2dcyA	185	87.52	b.29.1.11	131388