# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	5.43e-09		
2rghA	571	15.55		
1fnsA	196	20.14	c.62.1.1	34136
2a8eA	220	20.16	d.296.1.1	126397
1t4nA	94	22.27	d.50.1.1	106424
1tk1A	260	31.45	d.248.1.1	107066
1mwvA	714	43.78	a.93.1.3,a.93.1.3	85161,85162
2jm1A	141	50.40		
3ci0I	89	56.93		
2f20A	240	58.13	d.303.1.1	132791
2qmlA	198	59.82		
2phzA	311	63.26		
2b9kA	47	64.05		
1gg1A	350	67.61	c.1.10.4	29187
2gruA	368	69.74		
2bbeA	108	69.79		
1x7vA	99	72.09	d.58.4.11	109501
1zrnA	232	74.14	c.108.1.1	43323
1fndA	314	78.87	b.43.4.2,c.25.1.1	25626,31516
1zclA	180	79.54		
1x47A	98	84.88	d.50.1.1	121680