# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.04e-06		
2rghA	571	8.226		
3ci0I	89	37.85		
2bokL	55	46.92	g.3.11.1	128917
1tk1A	260	46.95	d.248.1.1	107066
1t4nA	94	54.39	d.50.1.1	106424
1z6eB	52	58.88	g.3.11.1	124519
1nlqA	108	60.61	b.121.3.1	85853
2a8eA	220	66.56	d.296.1.1	126397
1amxA	180	73.09	b.2.3.1	22410
2b9kA	47	74.64		
1k5jA	124	75.39	b.121.3.1	68201
1tr7A	164	76.60	b.2.3.2	119328
2bbeA	108	77.45		
1x47A	98	81.01	d.50.1.1	121680
2p3uA	52	83.78		
1fjsL	52	83.81	g.3.11.1	44226
2icgA	160	84.83		
2qmlA	198	87.64		
1x7vA	99	89.68	d.58.4.11	109501