# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.20e-05		
2j01Q	141	6.632		
1mgtA	174	7.360	a.4.2.1,c.55.7.1	16078,33753
1m2xA	223	15.33	d.157.1.1	84764
1t4nA	94	16.28	d.50.1.1	106424
1mqoA	227	16.63	d.157.1.1	103846
2d7vA	162	20.02		
1zb9A	143	22.93		
1kmdA	117	23.09	d.189.1.1	72744
2q3uA	383	26.61	d.126.1.6	139809
2yztA	67	29.18		
1ko3A	230	29.87	d.157.1.1	90974
1srvA	145	30.91	c.8.5.1	30817
1vkpA	383	32.67	d.126.1.6	108686
1ne9A	335	32.68	d.108.1.4,d.108.1.4	91839,91840
1zosA	230	33.85		
1ztcA	221	37.06	d.157.1.11	125635
2ek6A	95	37.20		
1t4oA	117	38.64	d.50.1.1	106425
1gg1A	350	39.76	c.1.10.4	29187
1x8hA	228	40.22	d.157.1.1	114961
1kid	203	40.52		
1y9wA	140	44.21	d.108.1.1	122783
1x47A	98	46.47	d.50.1.1	121680
1kidA	203	48.03	c.8.5.1	30771
1jysA	242	50.89	c.56.2.1	77216
1jjtA	228	53.11	d.157.1.1	63139
1x8gA	227	53.58	d.157.1.1	114960
1vhsA	175	53.71	d.108.1.1	100698
1qjcA	158	55.02	c.26.1.3	63328
1th0A	226	55.24	d.3.1.7	106903
3c19A	186	56.19		
1ftrA	296	56.70	d.58.33.1,d.58.33.1	39485,39486
1vqoH	171	60.02	d.41.4.1	120369
1a7tA	232	60.66	d.157.1.1	42041
1nrkA	328	64.36	b.44.2.1,d.250.1.1	92089,92090
1txnA	328	67.59	d.248.1.1	112779
2fhxA	246	67.71		
1djrD	103	69.51	b.40.2.1	24865
1euvA	221	69.56	d.3.1.7	37133
1z5oA	242	72.07		
1qqgA	264	73.81	b.55.1.2,b.55.1.2	26987,26988
1txdA	385	74.39	a.87.1.1,b.55.1.1	107422,107423
1pzxA	289	74.71	c.119.1.1	95484
3ckwA	304	76.76		
2ookA	127	78.59		
1wxcB	134	79.76		
2ek1A	95	80.18		
1n8fA	350	80.41	c.1.10.4	85397
3bjuA	521	80.49		
1mdlA	359	82.33	c.1.11.2,d.54.1.1	29247,38891
1jkeA	145	82.47	c.110.1.1	66791
1z5nA	242	83.22		
1bovA	69	83.42	b.40.2.1	25070
1u5fA	148	85.03	b.55.1.1	119542
2qdsA	227	85.39		
2arpF	152	86.03		
1vlyA	338	87.16	b.44.2.1,d.250.1.1	108871,108872
1mp9A	198	87.92	d.129.1.1,d.129.1.1	91385,91386