PFRMAT RR TARGET T0472 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplcc.th62.47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 51 MODEL 1 PIEARYAKEVAKNDKPYFNLKAANHQIIGTSQMYSSTAARDNGIKSVMEN GKTTTIKDLT 53 62 0 8 0.603629 53 63 0 8 0.520621 53 64 0 8 0.427257 53 65 0 8 0.43408 53 66 0 8 0.445101 53 67 0 8 0.510556 53 68 0 8 0.799055 53 69 0 8 0.818852 53 70 0 8 0.792957 53 72 0 8 0.673698 53 73 0 8 0.554496 53 74 0 8 0.600466 53 75 0 8 0.533166 53 76 0 8 0.537106 53 77 0 8 0.516506 53 78 0 8 0.524458 53 79 0 8 0.678134 53 80 0 8 0.586968 53 81 0 8 0.6235 53 82 0 8 0.504005 53 83 0 8 0.523647 53 84 0 8 0.522501 53 85 0 8 0.466929 53 87 0 8 0.43475 53 90 0 8 0.562043 53 92 0 8 0.416379 53 93 0 8 0.413836 53 94 0 8 0.407783 53 96 0 8 0.477918 53 97 0 8 0.444749 53 98 0 8 0.389751 53 100 0 8 0.545442 53 101 0 8 0.4984 53 102 0 8 0.398826 53 103 0 8 0.389385 53 105 0 8 0.451571 53 106 0 8 0.551549 53 107 0 8 0.406761 53 108 0 8 0.486586 54 63 0 8 0.563787 54 64 0 8 0.445995 54 65 0 8 0.395781 54 67 0 8 0.469779 54 68 0 8 0.829496 54 69 0 8 0.887658 54 70 0 8 0.858039 54 71 0 8 0.867409 54 72 0 8 0.734013 54 73 0 8 0.664595 54 74 0 8 0.607666 54 75 0 8 0.552354 54 76 0 8 0.536892 54 77 0 8 0.628788 54 78 0 8 0.564194 54 79 0 8 0.748108 54 80 0 8 0.650633 54 81 0 8 0.674289 54 82 0 8 0.487205 54 83 0 8 0.516557 54 84 0 8 0.499748 54 85 0 8 0.413044 54 90 0 8 0.443501 54 92 0 8 0.42571 54 93 0 8 0.461767 54 96 0 8 0.483346 54 97 0 8 0.435171 54 100 0 8 0.561647 54 101 0 8 0.567661 54 106 0 8 0.521011 54 107 0 8 0.437576 54 108 0 8 0.485564 55 64 0 8 0.40071 55 66 0 8 0.428842 55 67 0 8 0.551201 55 68 0 8 0.846185 55 69 0 8 0.874293 55 70 0 8 0.860102 55 72 0 8 0.788069 55 73 0 8 0.655429 55 74 0 8 0.563933 55 75 0 8 0.586289 55 76 0 8 0.500819 55 77 0 8 0.538278 55 78 0 8 0.559785 55 79 0 8 0.778934 55 80 0 8 0.704359 55 81 0 8 0.63438 55 82 0 8 0.440138 55 83 0 8 0.475958 55 84 0 8 0.485795 55 90 0 8 0.503648 55 92 0 8 0.492069 55 93 0 8 0.412203 55 94 0 8 0.426308 55 96 0 8 0.520703 55 97 0 8 0.474566 55 100 0 8 0.554511 55 101 0 8 0.577239 55 106 0 8 0.520927 55 107 0 8 0.482008 56 66 0 8 0.614525 56 67 0 8 0.74132 56 68 0 8 0.961052 56 69 0 8 0.961281 56 70 0 8 0.969123 56 71 0 8 0.933606 56 72 0 8 0.900487 56 73 0 8 0.636084 56 74 0 8 0.751268 56 75 0 8 0.616367 56 76 0 8 0.680375 56 77 0 8 0.818303 56 78 0 8 0.886923 56 79 0 8 0.922299 56 80 0 8 0.744514 56 81 0 8 0.850564 56 82 0 8 0.618908 56 83 0 8 0.661021 56 84 0 8 0.784142 56 85 0 8 0.460368 56 86 0 8 0.405797 56 87 0 8 0.49641 56 89 0 8 0.469627 56 90 0 8 0.699193 56 92 0 8 0.467509 56 93 0 8 0.657589 56 94 0 8 0.691514 56 96 0 8 0.661312 56 97 0 8 0.800803 56 98 0 8 0.590744 56 100 0 8 0.665714 56 101 0 8 0.73955 56 106 0 8 0.715182 56 107 0 8 0.475652 56 108 0 8 0.539403 57 66 0 8 0.472475 57 67 0 8 0.727856 57 68 0 8 0.928955 57 69 0 8 0.934149 57 70 0 8 0.925418 57 71 0 8 0.88264 57 72 0 8 0.764579 57 73 0 8 0.591986 57 74 0 8 0.642835 57 75 0 8 0.646005 57 76 0 8 0.681843 57 77 0 8 0.73414 57 78 0 8 0.731695 57 79 0 8 0.782398 57 80 0 8 0.718195 57 81 0 8 0.734223 57 82 0 8 0.520021 57 83 0 8 0.479503 57 84 0 8 0.558308 57 93 0 8 0.428433 57 96 0 8 0.442939 57 97 0 8 0.450649 57 100 0 8 0.48177 57 101 0 8 0.424394 57 105 0 8 0.429861 57 106 0 8 0.539549 58 67 0 8 0.764882 58 68 0 8 0.940738 58 69 0 8 0.920917 58 70 0 8 0.890834 58 71 0 8 0.844027 58 72 0 8 0.709108 58 73 0 8 0.427806 58 74 0 8 0.514861 58 75 0 8 0.596329 58 76 0 8 0.732888 58 77 0 8 0.670764 58 78 0 8 0.669672 58 79 0 8 0.815656 58 80 0 8 0.602084 58 81 0 8 0.555442 58 87 0 8 0.531811 58 90 0 8 0.697372 58 94 0 8 0.407574 58 97 0 8 0.464513 58 100 0 8 0.421098 58 106 0 8 0.486218 59 68 0 8 0.970444 59 69 0 8 0.977071 59 70 0 8 0.870261 59 71 0 8 0.861726 59 72 0 8 0.67522 59 73 0 8 0.431932 59 74 0 8 0.478453 59 75 0 8 0.595225 59 76 0 8 0.696559 59 77 0 8 0.702701 59 78 0 8 0.676902 59 79 0 8 0.811027 59 80 0 8 0.644529 59 81 0 8 0.54368 59 83 0 8 0.478566 59 90 0 8 0.473746 59 96 0 8 0.419716 59 97 0 8 0.392047 59 106 0 8 0.498342 60 70 0 8 0.708566 60 71 0 8 0.643435 60 72 0 8 0.523237 60 74 0 8 0.418786 60 75 0 8 0.511524 60 76 0 8 0.621731 60 77 0 8 0.581683 60 78 0 8 0.531205 60 79 0 8 0.538015 60 80 0 8 0.449914 60 81 0 8 0.412859 60 87 0 8 0.434674 60 100 0 8 0.390858 60 106 0 8 0.39569 61 70 0 8 0.457905 61 71 0 8 0.483339 61 72 0 8 0.43421 61 75 0 8 0.436128 61 76 0 8 0.532307 61 77 0 8 0.458212 61 79 0 8 0.489506 61 80 0 8 0.389828 62 71 0 8 0.42936 62 72 0 8 0.388669 62 74 0 8 0.477268 62 75 0 8 0.42646 62 76 0 8 0.455793 63 72 0 8 0.389643 63 73 0 8 0.400803 63 74 0 8 0.524367 63 75 0 8 0.392426 64 74 0 8 0.503945 65 74 0 8 0.662258 65 75 0 8 0.413032 65 76 0 8 0.462821 65 79 0 8 0.570302 65 80 0 8 0.507037 65 81 0 8 0.558006 65 82 0 8 0.727226 65 83 0 8 0.469533 65 84 0 8 0.411052 65 93 0 8 0.406671 65 96 0 8 0.435842 66 75 0 8 0.517043 66 76 0 8 0.635255 66 77 0 8 0.669583 66 78 0 8 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