# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.63e-09		
2b9kA	47	3.379		
2e55A	208	11.39		
1uokA	558	11.60	b.71.1.1,c.1.8.1	27801,28788
1gln	468	15.96		
1e79H	146	22.64	a.2.10.1,b.93.1.1	15721,28438
2il5A	171	27.98		
2rghA	571	32.87		
1x7vA	99	33.11	d.58.4.11	109501
1yf5L	254	34.28	c.55.1.11,c.55.1.11	123049,123050
1j7gA	144	34.46	c.110.1.1	84130
2rp4A	76	35.07		
2c1fA	234	37.00		
2q22A	139	37.51		
1zn6A	227	41.27	d.303.1.1	125373
1bd3A	243	46.90	c.61.1.1	34098
1cjxA	357	46.95	d.32.1.3,d.32.1.3	38516,38517
1lqwA	183	49.52	d.167.1.1	74210
2gffA	106	50.85		
1lmhA	184	52.33	d.167.1.1	74036
1yn8A	59	53.11		
1f7lA	121	53.55	d.150.1.2	59666
1izoA	417	53.77	a.104.1.1	83851
2bbeA	108	54.12		
1v3yA	192	54.47	d.167.1.1	113508
1iv8A	720	55.03	b.71.1.1,c.1.8.1	76842,76843
2vccA	891	55.84		
2ze0A	555	59.80		
1kzfA	230	60.16	d.108.1.3	73354
1tqzA	133	60.54	b.55.1.11	119327
1xe0A	114	63.00	b.121.3.1	115197
2f20A	240	65.40	d.303.1.1	132791
3b5lB	198	71.04		
2a1vA	144	71.12	d.198.3.1	126019
1j8eA	44	71.61	g.12.1.1	66437
1lm4A	194	72.05	d.167.1.1	84626
2p36A	335	79.92		
2icuA	229	80.97		
1e42A	258	81.08	b.1.10.1,d.105.1.1	22316,40792
1ro5A	201	82.28	d.108.1.3	105023
1j09A	468	82.46	a.97.1.1,c.26.1.1	77025,77026
2ot9A	180	86.90