# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	4.01e-10		
2il5A	171	2.191		
2b9kA	47	5.419		
2e55A	208	9.051		
2iblA	130	15.21		
1zn6A	227	15.83	d.303.1.1	125373
1g8kB	133	17.21	b.33.1.1	24435
2c1fA	234	20.48		
1tqzA	133	22.13	b.55.1.11	119327
2gffA	106	27.61		
2vccA	891	29.56		
2rghA	571	30.56		
1xfsA	178	31.06	d.129.3.5	109589
1g8jB	133	32.61	b.33.1.1	24439
1whnA	128	34.84	d.50.1.1	114648
1x7vA	99	36.25	d.58.4.11	109501
1lmhA	184	42.22	d.167.1.1	74036
1kzfA	230	43.72	d.108.1.3	73354
2bbeA	108	44.11		
1lqwA	183	45.14	d.167.1.1	74210
2a08A	60	46.39		
2q22A	139	47.69		
1wz3A	96	54.55	d.15.1.7	121478
2ac1A	541	56.64		
1ywmA	200	58.34		
1j8eA	44	61.76	g.12.1.1	66437
1v9sA	208	61.99	c.61.1.1	119894
1wmvA	54	63.37		
1utaA	81	63.67	d.58.52.1	108029
1lm4A	194	63.77	d.167.1.1	84626
1zhvA	134	65.19	d.58.18.8,d.58.18.8	125109,125110
1v8cA	168	65.20	d.15.3.1,d.129.5.1	100495,100496
1v3yA	192	66.03	d.167.1.1	113508
2icuA	229	66.86		
1vr1H	261	66.93		
1uokA	558	66.97	b.71.1.1,c.1.8.1	27801,28788
1t3oA	95	67.29		
2g3wA	182	69.59		
1e0bA	68	70.68	b.34.13.2	37476
1f5mA	180	71.18	d.110.2.1	40895
1bd3A	243	73.25	c.61.1.1	34098
1e79H	146	73.58	a.2.10.1,b.93.1.1	15721,28438
1ro5A	201	74.50	d.108.1.3	105023
1a48	306	74.59		
1t92A	116	75.85	d.24.1.3	112326
1moqA	368	76.20	c.80.1.1	35302
1e42A	258	78.78	b.1.10.1,d.105.1.1	22316,40792
2an1A	292	79.28		
1irsA	112	79.30	b.55.1.2	26991
1z6eB	52	79.55	g.3.11.1	124519
1ci3M	249	79.59	b.2.6.1,b.84.2.2	22480,28266
2p3uA	52	80.29		
1y4wA	518	82.77	b.29.1.19,b.67.2.3	116470,116471
1f5yA	85	83.01	g.12.1.1,g.12.1.1	44610,44611
1vpzA	73	84.76	b.151.1.1	113998
1wr7A	41	86.25		
1izoA	417	86.28	a.104.1.1	83851
2bwrA	401	86.42		
1ootA	60	87.19	b.34.2.1	93386
2rp4A	76	89.04