# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	3.21e-07		
2il5A	171	8.766		
2b9kA	47	16.18		
2e55A	208	25.84		
1v8cA	168	33.48	d.15.3.1,d.129.5.1	100495,100496
1uokA	558	38.49	b.71.1.1,c.1.8.1	27801,28788
1e79H	146	42.08	a.2.10.1,b.93.1.1	15721,28438
2gffA	106	45.02		
2rghA	571	48.68		
1x7vA	99	54.84	d.58.4.11	109501
1bd3A	243	55.33	c.61.1.1	34098
2bbeA	108	57.48		
1j7gA	144	57.77	c.110.1.1	84130
2rp4A	76	58.26		
2f20A	240	64.45	d.303.1.1	132791
1f7lA	121	66.53	d.150.1.2	59666
1xfsA	178	67.86	d.129.3.5	109589
1r9oA	477	69.05	a.104.1.1	104878
1cjxA	357	69.25	d.32.1.3,d.32.1.3	38516,38517
1gln	468	70.25		
1izoA	417	71.11	a.104.1.1	83851
1zn6A	227	72.12	d.303.1.1	125373
2ve3A	444	73.04		
1yd0A	96	75.22		
1tqzA	133	76.16	b.55.1.11	119327
2ot9A	180	76.39		
2e74D	179	76.86	b.33.1.1,f.23.12.1	132049,132050
2cibA	455	79.17		
2c1fA	234	81.77		
1kzfA	230	83.06	d.108.1.3	73354
2bokL	55	84.36	g.3.11.1	128917
2vccA	891	85.55		
1z6eB	52	86.43	g.3.11.1	124519
2iagA	482	86.62		
1v3yA	192	86.99	d.167.1.1	113508
3b6hA	498	87.51		
1xe0A	114	89.15	b.121.3.1	115197