# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	3.78e-10		
2il5A	171	2.786		
2b9kA	47	3.892		
2e55A	208	11.33		
1uokA	558	11.70	b.71.1.1,c.1.8.1	27801,28788
2rp4A	76	17.69		
1v8cA	168	21.01	d.15.3.1,d.129.5.1	100495,100496
2rghA	571	24.50		
1zn6A	227	26.98	d.303.1.1	125373
2c1fA	234	28.17		
1j7gA	144	29.90	c.110.1.1	84130
1x7vA	99	30.20	d.58.4.11	109501
1gln	468	30.99		
2gffA	106	31.96		
1e79H	146	36.34	a.2.10.1,b.93.1.1	15721,28438
1xfsA	178	36.66	d.129.3.5	109589
2bbeA	108	36.97		
2e74D	179	37.13	b.33.1.1,f.23.12.1	132049,132050
2ze0A	555	37.35		
2f20A	240	38.45	d.303.1.1	132791
1v3yA	192	40.17	d.167.1.1	113508
1kzfA	230	43.01	d.108.1.3	73354
1f7lA	121	43.73	d.150.1.2	59666
2g3wA	182	45.64		
1xe0A	114	49.61	b.121.3.1	115197
1bd3A	243	50.62	c.61.1.1	34098
2q22A	139	52.87		
1j8eA	44	53.80	g.12.1.1	66437
1wmvA	54	54.21		
2ot9A	180	54.31		
1ajjA	37	56.70	g.12.1.1	44609
2vccA	891	57.34		
1lm4A	194	57.93	d.167.1.1	84626
1vpzA	73	59.03	b.151.1.1	113998
1yqfA	203	59.12	d.25.1.1	123880
2q1mA	130	60.33		
2bokL	55	61.01	g.3.11.1	128917
1iwmA	186	61.07	b.125.1.2	83758
1ajj	37	63.42		
1e0bA	68	63.56	b.34.13.2	37476
1z6eB	52	63.87	g.3.11.1	124519
1lmhA	184	66.90	d.167.1.1	74036
1cjxA	357	66.92	d.32.1.3,d.32.1.3	38516,38517
1lqwA	183	69.72	d.167.1.1	74210
1xuvA	178	72.88	d.129.3.5	116069
3b93A	133	74.27		
1ndh	272	76.63		
1yd0A	96	77.81		
1p3cA	215	78.24	b.47.1.1	93996
1g8jB	133	78.38	b.33.1.1	24439
1fp3A	402	79.16	a.102.1.3	18842
1wr3A	36	80.77		
1e42A	258	80.80	b.1.10.1,d.105.1.1	22316,40792
1a48	306	81.72		
2p3uA	52	82.13		
2bhvA	246	82.33		
2a08A	60	85.31		
1yn8A	59	85.52