# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bidA 64 3.71e-10 1z2zA 446 5.005 2il5A 171 6.241 2b9kA 47 7.107 1a36A 592 7.369 a.2.8.1,d.163.1.2,e.15.1.1 15715,42173,43266 1t3bA 211 9.690 c.47.1.9,d.17.3.1 106341,106342 1t92A 116 12.48 d.24.1.3 112326 1m5q1 130 13.08 1adjA 421 14.24 c.51.1.1,d.104.1.1 33188,40737 2dt4A 143 14.53 1s5aA 150 16.91 d.17.4.10 98525 2c1fA 234 17.14 1c24A 263 18.90 d.127.1.1 41148 1nycA 111 19.07 b.61.2.2 92336 1obdA 306 20.79 d.143.1.1 86767 2qf7A 1165 23.23 1celA 434 23.46 b.29.1.10 24280 2i44A 324 23.85 1y4wA 518 23.98 b.29.1.19,b.67.2.3 116470,116471 1smlA 269 27.29 d.157.1.1 42053 3caxA 369 27.87 1bqyA 234 29.01 b.47.1.2 26332 3bbjA 272 31.00 2bgzA 299 31.02 1a8dA 452 32.67 b.29.1.6,b.42.4.2 24262,25607 1ro5A 201 34.59 d.108.1.3 105023 1rx0A 393 34.64 a.29.3.1,e.6.1.1 98007,98008 2v0uA 146 34.91 2b7kA 200 35.85 c.47.1.10 128042 1dppA 507 35.90 c.94.1.1 35800 1mqoA 227 36.25 d.157.1.1 103846 1x1fA 149 36.92 b.55.1.1 121579 1vfsA 386 37.43 b.49.2.2,c.1.6.1 108584,108585 2bhvA 246 37.99 1ek8A 185 38.40 d.67.3.1 59444 1zn6A 227 38.99 d.303.1.1 125373 1e79H 146 41.19 a.2.10.1,b.93.1.1 15721,28438 1lqwA 183 42.19 d.167.1.1 74210 1lmhA 184 42.29 d.167.1.1 74036 1zxmA 400 42.80 2zblA 421 42.86 2dkfA 431 43.95 1lniA 96 46.21 d.1.1.2 74046 1fs0E 138 47.02 a.2.10.1,b.93.1.1 59997,59998 1o7zA 77 47.91 d.9.1.1 86660 1m4mA 140 48.15 g.52.1.1 78605 1n4wA 504 50.03 c.3.1.2,d.16.1.1 91676,91677 3b48A 135 51.34 1vl7A 157 52.81 b.45.1.1 108732 2ppvA 332 52.91 1j7gA 144 53.48 c.110.1.1 84130 1vhsA 175 53.60 d.108.1.1 100698 2qjjA 402 54.30 1x7vA 99 54.62 d.58.4.11 109501 2p3eA 420 54.65 2dznA 228 54.95 2o5gA 148 55.80 2ew5A 181 55.84 1xuvA 178 56.06 d.129.3.5 116069 1j09A 468 56.22 a.97.1.1,c.26.1.1 77025,77026 1olmA 403 57.31 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1hdiA 413 59.29 c.86.1.1 60964 2pcqA 283 63.99 1f7lA 121 64.17 d.150.1.2 59666 1q3iA 214 65.76 d.220.1.1 104524 1dfcA 493 66.25 b.42.5.1,b.42.5.1,b.42.5.1,b.42.5.1 25616,25617,25618,25619 2imjA 166 66.28 1n9lA 109 68.24 d.110.3.6 85468 1zdsA 336 68.91 b.6.1.3,b.6.1.3 124952,124953 2gffA 106 70.17 2v1qA 60 70.18 2glfA 450 71.92 1p3dA 475 72.09 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1ajjA 37 72.19 g.12.1.1 44609 2bbeA 108 72.36 1h3qA 140 74.02 d.110.4.3 76652 2gkgA 127 75.32 1wlgA 299 75.86 b.152.1.1 114726 1v9tA 166 76.58 b.62.1.1 108451 2obwA 258 76.72 2rp4A 76 78.91 1olzA 663 79.68 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1svcP 365 80.44 b.1.18.1,b.2.5.3 21924,22443 1h9hE 223 80.46 b.47.1.2 103810 1ajj 37 80.67 1dabA 539 81.03 b.80.1.7 28049 1a48 306 81.10 2dynA 122 81.28 b.55.1.1 26957 1v8cA 168 81.36 d.15.3.1,d.129.5.1 100495,100496 2zdiC 151 82.60 3b3qE 197 84.71 1pnsB 234 87.20 i.1.1.1 88169