# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	3.41e-09		
2b9kA	47	3.210		
2e55A	208	11.12		
2il5A	171	16.63		
1e79H	146	21.43	a.2.10.1,b.93.1.1	15721,28438
2rp4A	76	22.25		
1gln	468	22.39		
1uokA	558	29.41	b.71.1.1,c.1.8.1	27801,28788
1x7vA	99	31.44	d.58.4.11	109501
2bokL	55	33.32	g.3.11.1	128917
2gffA	106	34.51		
1v3yA	192	35.22	d.167.1.1	113508
2rghA	571	40.30		
2c1fA	234	44.41		
1yf5L	254	45.83	c.55.1.11,c.55.1.11	123049,123050
2iblA	130	46.43		
2bbeA	108	47.43		
1zn6A	227	48.43	d.303.1.1	125373
1bd3A	243	50.88	c.61.1.1	34098
2e74D	179	52.35	b.33.1.1,f.23.12.1	132049,132050
2q22A	139	52.74		
1xe0A	114	52.87	b.121.3.1	115197
1v8cA	168	56.36	d.15.3.1,d.129.5.1	100495,100496
1irsA	112	69.95	b.55.1.2	26991
1lmhA	184	72.14	d.167.1.1	74036
2f20A	240	74.63	d.303.1.1	132791
1g8kB	133	74.67	b.33.1.1	24435
1o7zA	77	77.71	d.9.1.1	86660
1tqzA	133	77.87	b.55.1.11	119327
1lqwA	183	78.00	d.167.1.1	74210
1kzfA	230	82.67	d.108.1.3	73354
1f7lA	121	87.15	d.150.1.2	59666