# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.30e-08		
2b9kA	47	3.851		
2il5A	171	13.88		
2c1fA	234	22.21		
2e55A	208	24.98		
2bokL	55	25.78	g.3.11.1	128917
1v3yA	192	34.32	d.167.1.1	113508
1z6eB	52	35.12	g.3.11.1	124519
1f7lA	121	35.55	d.150.1.2	59666
1e79H	146	38.26	a.2.10.1,b.93.1.1	15721,28438
2iblA	130	38.60		
1v8cA	168	41.41	d.15.3.1,d.129.5.1	100495,100496
2p3uA	52	42.05		
2rghA	571	44.00		
2pr3B	51	45.10		
2rp4A	76	45.16		
2gffA	106	49.16		
1uokA	558	53.71	b.71.1.1,c.1.8.1	27801,28788
1kzfA	230	54.30	d.108.1.3	73354
2e74D	179	55.35	b.33.1.1,f.23.12.1	132049,132050
1x7vA	99	61.78	d.58.4.11	109501
2bbeA	108	63.48		
1gln	468	69.64		
1zn6A	227	72.18	d.303.1.1	125373
2yy3A	91	79.91		
1vpzA	73	80.12	b.151.1.1	113998
1lqwA	183	82.01	d.167.1.1	74210
1irsA	112	83.24	b.55.1.2	26991
2ac1A	541	83.65		
1yd0A	96	86.07		
2aj6A	159	86.79	d.108.1.1	126841
1g8kB	133	87.32	b.33.1.1	24435
1p3cA	215	89.25	b.47.1.1	93996