# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.68e-07		
1bqyA	234	29.75	b.47.1.2	26332
2r0lA	248	34.99		
2bbeA	108	36.54		
2e74D	179	36.87	b.33.1.1,f.23.12.1	132049,132050
2gffA	106	39.89		
1f7lA	121	51.25	d.150.1.2	59666
2b9kA	47	51.82		
3blcA	330	57.77		
2aj6A	159	58.25	d.108.1.1	126841
1x7vA	99	58.92	d.58.4.11	109501
1v8cA	168	63.19	d.15.3.1,d.129.5.1	100495,100496
2axiA	115	72.65	a.42.1.1	127494
1t4fM	110	72.99	a.42.1.1	119144
1ehaA	558	73.93	b.1.18.2,b.71.1.1,c.1.8.1	21859,27786,28773
1f5yA	85	73.96	g.12.1.1,g.12.1.1	44610,44611
1sqwA	188	81.82	b.122.1.1,d.17.6.3	119033,119034
2a8eA	220	82.83	d.296.1.1	126397
1p3cA	215	85.31	b.47.1.1	93996
2bbdA	350	88.81		
2au7A	175	88.86		
1ki1B	352	89.94	a.87.1.1,b.55.1.1	72497,72498