# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.10e-08		
1x7vA	99	10.73	d.58.4.11	109501
2bbeA	108	11.83		
2gffA	106	14.81		
1g8jB	133	18.16	b.33.1.1	24439
2cibA	455	18.18		
1x8vA	455	18.40	a.104.1.1	114968
1h5zA	455	19.71	a.104.1.1	90622
2b9kA	47	20.24		
1xe0A	114	20.38	b.121.3.1	115197
1uokA	558	20.71	b.71.1.1,c.1.8.1	27801,28788
1u13A	455	22.46	a.104.1.1	107578
2iagA	482	29.32		
1k5jA	124	29.33	b.121.3.1	68201
2rghA	571	30.86		
2aj6A	159	31.73	d.108.1.1	126841
2ve3A	444	31.89		
2e74D	179	34.29	b.33.1.1,f.23.12.1	132049,132050
1nlqA	108	34.35	b.121.3.1	85853
1nr6A	473	39.09	a.104.1.1	92085
2hi4A	495	40.45		
3b6hA	498	43.36		
2fdvA	476	43.54		
1bqyA	234	44.66	b.47.1.2	26332
1po5A	476	45.78	a.104.1.1	94963
1izoA	417	48.63	a.104.1.1	83851
2fb0A	94	48.88		
2a1vA	144	48.97	d.198.3.1	126019
1ea1A	455	49.28	a.104.1.1	18970
3c6gA	479	51.94		
1vm9A	111	53.62	b.33.1.1	108886
2ze0A	555	53.65		
1kzfA	230	54.64	d.108.1.3	73354
1e42A	258	55.98	b.1.10.1,d.105.1.1	22316,40792
1r9oA	477	56.48	a.104.1.1	104878
1jw3A	140	61.47	d.208.1.1	67373
1tk1A	260	61.72	d.248.1.1	107066
2f20A	240	62.10	d.303.1.1	132791
1zo4A	473	65.57		
1tqnA	486	67.19	a.104.1.1	107238
1y4wA	518	70.54	b.29.1.19,b.67.2.3	116470,116471
1whnA	128	73.97	d.50.1.1	114648
1u5dA	108	73.99	b.55.1.1	119536
1ro5A	201	74.90	d.108.1.3	105023
1iv8A	720	77.27	b.71.1.1,c.1.8.1	76842,76843
2ij2A	470	79.58	a.104.1.1	137449
1yrcA	414	80.40	a.104.1.1	123917
2nqoB	188	82.34		
2dg5B	190	83.34		
1ndh	272	83.41		
2c43A	323	85.31		
1zn6A	227	86.63	d.303.1.1	125373
2nugA	221	88.02		
3b98A	475	88.08		
1kjqA	391	89.09	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618