# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bidA 64 2.92e-07 1t4nA 94 3.984 d.50.1.1 106424 1mdl 359 4.718 1dloB 427 5.553 e.8.1.2 43041 3bjuA 521 6.087 1m2xA 223 6.951 d.157.1.1 84764 2mnr 357 7.770 1zn8A 180 8.225 c.61.1.1 125376 1eovA 487 8.603 b.40.4.1,d.104.1.1 25239,40760 2qntA 141 11.85 1lt5D 103 12.12 b.40.2.1 24875 1z7gA 217 12.71 c.61.1.1 124624 1mqoA 227 12.84 d.157.1.1 103846 3c26A 266 13.32 1u9yA 284 16.16 c.61.1.2,c.61.1.2 119655,119656 1jjtA 228 19.92 d.157.1.1 63139 2j01Q 141 20.05 1ko3A 230 20.97 d.157.1.1 90974 2yztA 67 22.14 1hniB 427 23.04 e.8.1.2 43045 1mgtA 174 23.14 a.4.2.1,c.55.7.1 16078,33753 2ek6A 95 23.64 2pgwA 384 24.05 1pzxA 289 24.55 c.119.1.1 95484 1asyA 490 27.97 b.40.4.1,d.104.1.1 25242,40763 1vybA 238 31.51 d.151.1.1 108897 1y9kA 157 32.67 d.108.1.1 122779 1dkuA 317 33.45 c.61.1.2,c.61.1.2 34118,34119 2pozA 392 35.08 2d4eA 515 35.67 1eetB 427 36.25 e.8.1.2 43079 1bam 213 37.21 1o04A 500 38.25 c.82.1.1 86508 2ek1A 95 38.64 2oqyA 391 38.86 1y89A 238 39.48 1x8gA 227 41.24 d.157.1.1 114960 1bovA 69 41.35 b.40.2.1 25070 1x8hA 228 42.80 d.157.1.1 114961 3c4bA 265 43.44 1h6hA 143 43.94 d.189.1.1 65681 1djrD 103 44.86 b.40.2.1 24865 1uzbA 516 44.92 c.82.1.1 100220 1srvA 145 44.92 c.8.5.1 30817 1t4oA 117 45.79 d.50.1.1 106425 2jbhA 225 46.78 2hv2A 400 47.09 1vjlA 164 47.86 d.257.1.1 100822 3chbD 104 49.17 b.40.2.1 24970 2ez6A 221 49.21 a.149.1.1,d.50.1.1 132616,132617 2p14A 192 51.00 1jjeA 222 51.14 d.157.1.1 63117 1g2qA 187 51.97 c.61.1.1 65117 1mdlA 359 53.69 c.1.11.2,d.54.1.1 29247,38891 2uyoA 310 53.97 2ggtA 164 54.48 c.47.1.10 135156 2p1zA 180 55.28 1e0bA 68 55.53 b.34.13.2 37476 1stzA 338 56.65 a.4.5.51,d.110.2.3 106009,106010 1r4pB 70 58.19 b.40.2.1 97026 3bn4A 122 58.64 1c0aA 585 58.97 b.40.4.1,d.74.4.1,d.104.1.1 25246,39731,40767 2qedA 258 60.67 2e5yA 133 61.46 1s8eA 333 62.82 d.159.1.4 105368 1c4qA 69 63.85 b.40.2.1 25010 1zboA 210 65.23 b.122.1.10 124859 2rbbA 141 67.56 2pa2A 151 67.88 1jmtA 104 68.47 d.58.7.3 63180 1pczA 191 68.57 d.129.1.1,d.129.1.1 41292,41293 1kllA 130 69.25 d.32.1.2 72720 1ne9A 335 69.37 d.108.1.4,d.108.1.4 91839,91840 2vktA 289 69.97 1qk3A 233 70.61 c.61.1.1 34031 2iutA 574 72.30 1dbrA 231 74.30 c.61.1.1 34041 2k0mA 104 75.38 3bboO 135 77.44 2cbzA 237 77.68 2nugA 221 81.29 1y0bA 197 82.99 c.61.1.1 122476 1kidA 203 83.61 c.8.5.1 30771 1wnaA 131 85.48 d.319.1.1 121091 1wmhA 89 86.05 d.15.2.2 114744 2bosA 68 86.38 b.40.2.1 25025 2gx9A 129 86.54 d.299.1.1 135828 1dxkA 227 86.67 d.157.1.1 42036 1kq6A 141 86.75 d.189.1.1 91020 1ii7A 333 86.79 d.159.1.4 62415 1znbA 232 87.98 d.157.1.1 42039 1wueA 386 89.59 c.1.11.2,d.54.1.1 114892,114893