# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.81e-09		
2fa1A	160	2.888	d.190.1.2	133182
2yhx	457	6.161		
2yhxA	457	11.04	i.12.1.1	46024
1yk3A	210	13.95	d.108.1.1	123493
2i79A	172	17.70		
1atzA	189	23.63	c.62.1.1	34132
1k8kD	300	25.27	d.198.2.1,d.198.2.1	68309,68310
1lq9A	112	29.53	d.58.4.3	78129
2b9kA	47	30.71		
1pt6A	213	30.73	c.62.1.1	95091
3ci0I	89	31.54		
1v7pC	200	31.61	c.62.1.1	108408
2bz6L	53	33.53	g.3.11.1	129553
1t4nA	94	34.09	d.50.1.1	106424
2d4qA	257	37.40		
1vplA	256	44.31	c.37.1.12	113966
1yd0A	96	45.72		
1vjuA	309	46.08	d.248.1.1	100835
3pcgA	200	48.24	b.3.6.1	22647
3b5lB	198	49.00		
2yrlA	102	49.73		
2icuA	229	51.50		
2p19A	149	52.34		
2vupA	190	58.64		
3cnvA	162	61.18		
2r6gF	514	61.96		
2ooiA	162	62.67		
2p3uA	52	63.96		
1vi3A	170	65.74	b.17.1.2	100730
2aexA	346	67.98		
2vgdA	218	68.42		
2pr3B	51	71.40		
1nlqA	108	71.44	b.121.3.1	85853
1qwoA	442	71.65	c.60.1.2	104620
2prbA	196	72.64		
1t4oA	117	73.48	d.50.1.1	106425
2rp4A	76	74.26		
2zdiC	151	75.68		
1ftrA	296	77.76	d.58.33.1,d.58.33.1	39485,39486
1gxjA	186	78.25	d.215.1.1	70707
2p5qA	170	78.29		
1yloA	348	81.89	b.49.3.1,c.56.5.4	123659,123660
2yztA	67	83.38		
2it1A	362	88.06		
2qjjA	402	88.11		
1xe0A	114	89.31	b.121.3.1	115197
2hx0A	154	89.45	d.290.1.3	136830