# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	8.26e-09		
2fa1A	160	2.561	d.190.1.2	133182
2yhx	457	5.622		
1yk3A	210	5.926	d.108.1.1	123493
2yhxA	457	9.247	i.12.1.1	46024
2b9kA	47	9.630		
2i79A	172	13.60		
1t4nA	94	24.12	d.50.1.1	106424
2rp4A	76	25.70		
2bz6L	53	28.31	g.3.11.1	129553
2d4qA	257	33.91		
1k8kD	300	37.08	d.198.2.1,d.198.2.1	68309,68310
1lq9A	112	38.45	d.58.4.3	78129
1atzA	189	39.75	c.62.1.1	34132
3ci0I	89	41.09		
2p3uA	52	42.35		
3pcgA	200	43.11	b.3.6.1	22647
2pr3B	51	43.11		
2yrlA	102	48.91		
2prbA	196	49.63		
2oggA	152	50.88		
2r6gF	514	52.71		
3b5lB	198	52.72		
2hv2A	400	54.86		
2p19A	149	55.33		
2aexA	346	57.01		
2qjjA	402	57.43		
1yloA	348	60.66	b.49.3.1,c.56.5.4	123659,123660
1v7pC	200	61.03	c.62.1.1	108408
2it1A	362	64.15		
1pt6A	213	64.67	c.62.1.1	95091
1vi3A	170	65.68	b.17.1.2	100730
1vjuA	309	66.28	d.248.1.1	100835
2vgdA	218	69.66		
2zdiC	151	71.35		
1ftrA	296	72.21	d.58.33.1,d.58.33.1	39485,39486
3caxA	369	72.63		
2icuA	229	73.71		
1qwoA	442	80.59	c.60.1.2	104620
1m93C	41	81.23		
1z6eB	52	83.00	g.3.11.1	124519
2ooiA	162	83.05		
1dxgA	36	84.06	g.41.5.2	45247
2nqlA	388	84.66		
1yd0A	96	85.68		
3cnvA	162	86.64