# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.28e-09		
2yhx	457	4.790		
2fa1A	160	5.701	d.190.1.2	133182
2b9kA	47	10.09		
2bz6L	53	10.64	g.3.11.1	129553
2i79A	172	10.76		
1yk3A	210	10.82	d.108.1.1	123493
2p3uA	52	11.77		
2pr3B	51	11.83		
1yloA	348	12.57	b.49.3.1,c.56.5.4	123659,123660
2yhxA	457	14.41	i.12.1.1	46024
1z6eB	52	18.98	g.3.11.1	124519
2cnqA	306	22.13	d.143.1.1	130646
1obdA	306	23.35	d.143.1.1	86767
3pcgA	200	30.15	b.3.6.1	22647
2bokL	55	32.24	g.3.11.1	128917
1ftrA	296	32.44	d.58.33.1,d.58.33.1	39485,39486
1k8kD	300	32.70	d.198.2.1,d.198.2.1	68309,68310
1vjuA	309	38.15	d.248.1.1	100835
3ci0I	89	39.69		
2r6gF	514	43.21		
2rp4A	76	43.31		
2it1A	362	46.02		
2dfzA	381	46.98		
2fafA	608	49.62		
1u2eA	289	49.67		
1atzA	189	49.72	c.62.1.1	34132
2zdiC	151	49.80		
2d4qA	257	50.06		
3buxB	329	50.47		
2aexA	346	51.41		
1z47A	355	60.30		
1yvhA	329	62.19	a.39.1.7,a.48.1.1,d.93.1.1	124096,124097,124098
1t4nA	94	63.05	d.50.1.1	106424
2fb0A	94	63.32		
1r17A	343	65.68	b.2.3.4,b.2.3.4	96796,96797
3caxA	369	67.24		
2p5qA	170	67.58		
1khbA	625	70.78	c.91.1.1,c.109.1.1	68606,68607
1pt6A	213	73.94	c.62.1.1	95091
2prbA	196	75.00		
2oggA	152	76.93		
2qf2A	624	77.81		
3bl4A	124	79.04		
1ykdA	398	80.41		
1qwoA	442	81.47	c.60.1.2	104620
1vi3A	170	84.06	b.17.1.2	100730
2bbeA	108	88.50