# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.00e-08		
2fa1A	160	6.467	d.190.1.2	133182
2yhx	457	7.823		
2yhxA	457	19.96	i.12.1.1	46024
2b9kA	47	20.63		
1yk3A	210	21.39	d.108.1.1	123493
2pr3B	51	21.60		
2p3uA	52	23.41		
1yloA	348	25.38	b.49.3.1,c.56.5.4	123659,123660
2cnqA	306	26.75	d.143.1.1	130646
2i79A	172	29.11		
2bz6L	53	31.97	g.3.11.1	129553
2d4qA	257	34.02		
2dfzA	381	34.31		
2zdiC	151	34.99		
1atzA	189	36.26	c.62.1.1	34132
3pcgA	200	37.41	b.3.6.1	22647
1obdA	306	40.97	d.143.1.1	86767
1vi3A	170	46.95	b.17.1.2	100730
1k8kD	300	48.59	d.198.2.1,d.198.2.1	68309,68310
3ci0I	89	49.65		
1z6eB	52	52.03	g.3.11.1	124519
2fb0A	94	55.40		
1ftrA	296	57.42	d.58.33.1,d.58.33.1	39485,39486
2icuA	229	57.92		
1t4nA	94	58.57	d.50.1.1	106424
1pt6A	213	61.01	c.62.1.1	95091
1yd0A	96	62.20		
2bokL	55	66.12	g.3.11.1	128917
2rp4A	76	68.07		
2qzuA	491	68.42		
2it1A	362	70.95		
1g8pA	350	76.35	c.37.1.20	60376
2p5qA	170	79.62		
1x7vA	99	82.88	d.58.4.11	109501
2yrlA	102	85.19		
2r6gF	514	85.25		
3buxB	329	85.37		
1vplA	256	86.12	c.37.1.12	113966
1q8bA	105	87.87	d.58.4.6	96201
1v7pC	200	88.53	c.62.1.1	108408
2bbeA	108	88.81