# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	8.13e-09		
2fa1A	160	4.510	d.190.1.2	133182
2yhx	457	6.968		
1yk3A	210	14.38	d.108.1.1	123493
2i79A	172	14.55		
2b9kA	47	15.04		
2pr3B	51	16.89		
2p3uA	52	17.25		
2bz6L	53	18.79	g.3.11.1	129553
2yhxA	457	20.28	i.12.1.1	46024
1yloA	348	22.20	b.49.3.1,c.56.5.4	123659,123660
2cnqA	306	28.68	d.143.1.1	130646
1z6eB	52	30.76	g.3.11.1	124519
1atzA	189	32.28	c.62.1.1	34132
2bokL	55	34.11	g.3.11.1	128917
1obdA	306	34.92	d.143.1.1	86767
2zdiC	151	37.88		
1k8kD	300	41.21	d.198.2.1,d.198.2.1	68309,68310
3pcgA	200	41.90	b.3.6.1	22647
2d4qA	257	44.24		
3ci0I	89	47.46		
1pt6A	213	48.53	c.62.1.1	95091
2it1A	362	48.72		
2icuA	229	50.11		
2dfzA	381	50.17		
2rp4A	76	50.75		
2fb0A	94	55.51		
1t4nA	94	56.31	d.50.1.1	106424
1z47A	355	59.24		
3buxB	329	59.56		
1vi3A	170	61.51	b.17.1.2	100730
1vjuA	309	61.71	d.248.1.1	100835
1vplA	256	62.46	c.37.1.12	113966
1yvhA	329	65.58	a.39.1.7,a.48.1.1,d.93.1.1	124096,124097,124098
2p5qA	170	68.11		
1v7pC	200	69.88	c.62.1.1	108408
1ftrA	296	69.98	d.58.33.1,d.58.33.1	39485,39486
1g8pA	350	71.45	c.37.1.20	60376
1fs0E	138	72.61	a.2.10.1,b.93.1.1	59997,59998
1u2eA	289	73.14		
1ijbA	202	74.08	c.62.1.1	71229
2bbeA	108	77.50		
2vgdA	218	77.81		
2qzuA	491	78.33		
1q8bA	105	78.83	d.58.4.6	96201
1fxkC	133	80.44	a.2.5.1	15702
1x7vA	99	80.69	d.58.4.11	109501
1ji1A	637	83.23	b.1.18.2,b.71.1.1,c.1.8.1	71666,71667,71668
1yd0A	96	84.50		
2prbA	196	87.10