# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	4.15e-09		
2fa1A	160	2.055	d.190.1.2	133182
1yk3A	210	4.391	d.108.1.1	123493
2i79A	172	5.134		
2yhx	457	6.709		
2bz6L	53	15.69	g.3.11.1	129553
2yhxA	457	18.20	i.12.1.1	46024
1yloA	348	20.24	b.49.3.1,c.56.5.4	123659,123660
2b9kA	47	23.34		
2d4qA	257	25.21		
2p3uA	52	26.25		
1r17A	343	26.55	b.2.3.4,b.2.3.4	96796,96797
2prbA	196	27.87		
2pr3B	51	28.19		
2rp4A	76	29.58		
2aexA	346	29.98		
2p19A	149	30.39		
1vjuA	309	33.42	d.248.1.1	100835
2ooiA	162	33.77		
1atzA	189	35.92	c.62.1.1	34132
1obdA	306	36.04	d.143.1.1	86767
3cnvA	162	38.66		
2cnqA	306	39.86	d.143.1.1	130646
3ci0I	89	43.65		
1yd0A	96	44.27		
1vi3A	170	44.58	b.17.1.2	100730
1z6eB	52	46.38	g.3.11.1	124519
2r6gF	514	47.35		
1k8kD	300	48.88	d.198.2.1,d.198.2.1	68309,68310
2oggA	152	52.20		
3pcgA	200	53.31	b.3.6.1	22647
2qzuA	491	56.24		
2dfzA	381	56.53		
1t4nA	94	57.83	d.50.1.1	106424
3bl4A	124	57.93		
2ikkA	173	58.10		
2a28A	54	58.91		
2bokL	55	59.14	g.3.11.1	128917
2fafA	608	63.16		
1lq9A	112	64.61	d.58.4.3	78129
1ykdA	398	66.13		
1wyxA	69	66.66		
2g1lA	104	66.86	b.26.1.2	134520
1e0bA	68	67.89	b.34.13.2	37476
2fcwB	80	69.89	g.12.1.1,g.12.1.1	133289,133290
2i7fA	108	71.27		
1pt6A	213	71.78	c.62.1.1	95091
1fs0E	138	71.95	a.2.10.1,b.93.1.1	59997,59998
3caxA	369	73.49		
1ftrA	296	74.03	d.58.33.1,d.58.33.1	39485,39486
2yxmA	100	75.31		
2vupA	190	76.42		
3buxB	329	80.45		
1u2eA	289	82.84		
1tl9A	339	85.21	d.3.1.3	112505
1m4iA	181	85.49	d.108.1.1	74457
2qjjA	402	87.80		
1p7tA	731	88.21	c.1.13.1	94319
1yalA	218	89.95	d.3.1.1	37025