# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.05e-08		
2fa1A	160	4.278	d.190.1.2	133182
2yhx	457	6.212		
2b9kA	47	6.967		
1yk3A	210	12.35	d.108.1.1	123493
2bz6L	53	15.17	g.3.11.1	129553
2yhxA	457	16.30	i.12.1.1	46024
2rp4A	76	17.02		
2pr3B	51	18.16		
2p3uA	52	19.16		
2i79A	172	23.22		
1yloA	348	32.00	b.49.3.1,c.56.5.4	123659,123660
2bokL	55	33.26	g.3.11.1	128917
1z6eB	52	35.06	g.3.11.1	124519
1u2eA	289	36.89		
2zdiC	151	42.81		
2dfzA	381	45.19		
3pcgA	200	45.24	b.3.6.1	22647
2d4qA	257	47.23		
1atzA	189	47.44	c.62.1.1	34132
2it1A	362	53.52		
1t4nA	94	56.13	d.50.1.1	106424
3ci0I	89	61.42		
1k8kD	300	67.00	d.198.2.1,d.198.2.1	68309,68310
2yrlA	102	69.32		
1obdA	306	72.59	d.143.1.1	86767
2qzuA	491	73.60		
1z47A	355	74.20		
1r17A	343	75.83	b.2.3.4,b.2.3.4	96796,96797
3buxB	329	78.48		
1fs0E	138	82.97	a.2.10.1,b.93.1.1	59997,59998
1vi3A	170	83.21	b.17.1.2	100730
2icuA	229	85.52		
1pt6A	213	86.48	c.62.1.1	95091
2cnqA	306	87.30	d.143.1.1	130646
1yvhA	329	89.97	a.39.1.7,a.48.1.1,d.93.1.1	124096,124097,124098