# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.25e-08		
2fa1A	160	3.741	d.190.1.2	133182
2yhx	457	7.345		
2b9kA	47	8.377		
1yk3A	210	11.41	d.108.1.1	123493
2i79A	172	11.76		
2p3uA	52	15.27		
2pr3B	51	15.59		
2yhxA	457	16.54	i.12.1.1	46024
1yloA	348	20.40	b.49.3.1,c.56.5.4	123659,123660
2rp4A	76	23.08		
2bz6L	53	24.95	g.3.11.1	129553
1obdA	306	25.74	d.143.1.1	86767
1z6eB	52	26.99	g.3.11.1	124519
2bokL	55	27.47	g.3.11.1	128917
2cnqA	306	28.97	d.143.1.1	130646
2it1A	362	33.03		
1r17A	343	42.05	b.2.3.4,b.2.3.4	96796,96797
1u2eA	289	47.27		
1k8kD	300	54.36	d.198.2.1,d.198.2.1	68309,68310
3pcgA	200	55.78	b.3.6.1	22647
1nlqA	108	56.23	b.121.3.1	85853
1z47A	355	58.60		
1atzA	189	66.80	c.62.1.1	34132
3ci0I	89	67.05		
2icuA	229	69.03		
2fcwB	80	70.56	g.12.1.1,g.12.1.1	133289,133290
1vplA	256	71.71	c.37.1.12	113966
2d4qA	257	72.29		
1lq9A	112	73.64	d.58.4.3	78129
1t92A	116	74.07	d.24.1.3	112326
1dxgA	36	79.61	g.41.5.2	45247
3b5lB	198	83.30		
1g8kB	133	84.95	b.33.1.1	24435
1izoA	417	85.39	a.104.1.1	83851