# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	9.67e-08		
2fa1A	160	5.611	d.190.1.2	133182
2yhx	457	6.284		
2b9kA	47	9.232		
2bz6L	53	9.814	g.3.11.1	129553
2p3uA	52	12.57		
2pr3B	51	15.04		
2yhxA	457	16.81	i.12.1.1	46024
1yk3A	210	18.85	d.108.1.1	123493
1yloA	348	23.46	b.49.3.1,c.56.5.4	123659,123660
2i79A	172	27.55		
2bokL	55	27.86	g.3.11.1	128917
1z6eB	52	28.80	g.3.11.1	124519
2rp4A	76	43.02		
1r17A	343	48.96	b.2.3.4,b.2.3.4	96796,96797
1u2eA	289	65.30		
1h6fA	193	65.77	b.2.5.4	70901
1fs0E	138	68.50	a.2.10.1,b.93.1.1	59997,59998
2dfzA	381	68.72		
1atzA	189	69.94	c.62.1.1	34132
2it1A	362	70.03		
2d4qA	257	70.76		
2qzuA	491	70.83		
2zdiC	151	74.95		
1k8kD	300	79.52	d.198.2.1,d.198.2.1	68309,68310
1vi3A	170	80.67	b.17.1.2	100730
1t4nA	94	81.41	d.50.1.1	106424
2vgdA	218	82.01		
1ynaA	194	82.51	b.29.1.11	24335
2fafA	608	83.18		
1v7pC	200	85.12	c.62.1.1	108408
3ci0I	89	85.27		
2dcyA	185	85.75	b.29.1.11	131388
1pt6A	213	86.34	c.62.1.1	95091
3pcgA	200	86.95	b.3.6.1	22647
1lq9A	112	88.48	d.58.4.3	78129
2yrlA	102	88.61		
2cnqA	306	89.23	d.143.1.1	130646