# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	6.76e-08		
2yhx	457	20.39		
2i79A	172	25.53		
2d4qA	257	28.99		
4tsvA	150	36.59	b.22.1.1	23860
2fa1A	160	38.85	d.190.1.2	133182
1vi3A	170	46.70	b.17.1.2	100730
1b77A	228	49.95	d.131.1.2,d.131.1.2	41362,41363
2j59M	168	50.81		
2yhxA	457	52.14	i.12.1.1	46024
1mwvA	714	56.40	a.93.1.3,a.93.1.3	85161,85162
3bl4A	124	59.48		
2a8eA	220	62.63	d.296.1.1	126397
2it1A	362	64.62		
2jm1A	141	69.98		
2ve3A	444	72.03		
2e7aA	157	72.03		
2prbA	196	72.44		
1amx	180	77.03		
1vjlA	164	77.04	d.257.1.1	100822
2phzA	311	78.05		
1t4nA	94	79.13	d.50.1.1	106424
1r17A	343	85.44	b.2.3.4,b.2.3.4	96796,96797
2yrlA	102	89.04		
2r6gF	514	89.06		
3ci0I	89	89.36