# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	9.38e-07		
2fhxA	246	3.051		
2hv2A	400	4.305		
1t4nA	94	4.783	d.50.1.1	106424
2j01Q	141	6.841		
2i00A	406	8.011		
2gcuA	245	12.59		
1jj2H	167	14.88	d.41.4.1	63093
2yztA	67	16.75		
1zosA	230	18.19		
2gx9A	129	19.10	d.299.1.1	135828
1djrD	103	20.27	b.40.2.1	24865
1xqaA	113	21.29	d.32.1.2	115837
1euvA	221	21.53	d.3.1.7	37133
1vqoH	171	25.98	d.41.4.1	120369
1u69A	163	28.74	d.32.1.7	107699
3chbD	104	29.15	b.40.2.1	24970
3bjuA	521	29.34		
1qfxA	460	32.53	c.60.1.2	33994
2pa2A	151	33.57		
3bl6A	230	38.01		
3c4bA	265	38.16		
1qh5A	260	40.96	d.157.1.2	42057
2ek1A	95	43.76		
2r6iA	284	44.42		
2qjjA	402	44.59		
1eovA	487	45.09	b.40.4.1,d.104.1.1	25239,40760
2az4A	429	46.90	d.157.1.10	127597
1qwoA	442	47.29	c.60.1.2	104620
1c4qA	69	48.24	b.40.2.1	25010
2e5yA	133	49.16		
2ek6A	95	50.17		
1mgtA	174	50.74	a.4.2.1,c.55.7.1	16078,33753
1mp9A	198	58.59	d.129.1.1,d.129.1.1	91385,91386
1g2qA	187	59.51	c.61.1.1	65117
2od6A	110	59.71		
2d7vA	162	60.44		
2vqzA	166	61.63		
1ne9A	335	61.63	d.108.1.4,d.108.1.4	91839,91840
1mdlA	359	61.96	c.1.11.2,d.54.1.1	29247,38891
1ko3A	230	62.30	d.157.1.1	90974
1kzfA	230	62.48	d.108.1.3	73354
2fh5A	185	65.04	d.110.4.4	133477
1r4pB	70	65.24	b.40.2.1	97026
1jysA	242	66.58	c.56.2.1	77216
2c5qA	240	67.29		
1elvA	333	68.20	b.47.1.2,g.18.1.1	59454,59455
1q1rA	431	68.90	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
2q3uA	383	70.70	d.126.1.6	139809
3bn4A	122	71.27		
2qedA	258	72.24		
1u9yA	284	72.28	c.61.1.2,c.61.1.2	119655,119656
1c0pA	363	73.14	c.4.1.2,d.16.1.3	30647,37934
2p36A	335	73.32		
1stzA	338	73.40	a.4.5.51,d.110.2.3	106009,106010
2nykA	285	73.57		
1kw3B	292	73.81	d.32.1.3,d.32.1.3	77549,77550
2vqeK	129	73.83		
180lA	164	78.16	d.2.1.3	36867
2qcuA	501	81.16		
1y9wA	140	82.96	d.108.1.1	122783
1vjlA	164	88.10	d.257.1.1	100822
3beuA	224	88.45		
1st9A	143	89.88	c.47.1.10	98987