# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	8.43e-11		
2rghA	571	1.115		
1gg1A	350	3.088	c.1.10.4	29187
1of8A	370	3.505	c.1.10.4	92819
2b9kA	47	8.672		
2qztA	111	12.93		
1fnsA	196	14.29	c.62.1.1	34136
2pr3B	51	15.39		
1fjsL	52	15.76	g.3.11.1	44226
2p3uA	52	16.67		
1n8fA	350	18.07	c.1.10.4	85397
1t4nA	94	18.73	d.50.1.1	106424
2bz6L	53	18.75	g.3.11.1	129553
1z6eB	52	20.14	g.3.11.1	124519
1kliL	69	24.67	g.3.11.1	77436
1wocA	103	24.76		
2bokL	55	25.71	g.3.11.1	128917
2fa1A	160	28.57	d.190.1.2	133182
2fafA	608	29.21		
2f20A	240	30.58	d.303.1.1	132791
1yd0A	96	33.33		
1q8bA	105	36.07	d.58.4.6	96201
1fsuA	492	38.66	c.76.1.2	35032
1ijbA	202	38.78	c.62.1.1	71229
2nqlA	388	39.50		
2z5aB	420	41.43		
3ci0I	89	41.83		
1nlqA	108	42.53	b.121.3.1	85853
1x7vA	99	43.05	d.58.4.11	109501
1zn6A	227	43.84	d.303.1.1	125373
2gz6A	388	47.65		
2q8pA	260	47.65		
2bbeA	108	50.61		
1t4oA	117	52.44	d.50.1.1	106425
2icuA	229	52.58		
2prbA	196	54.30		
1mf7A	194	54.97	c.62.1.1	84937
1h9oA	112	55.05	d.93.1.1	60837
1kwmA	402	55.24	c.56.5.1,d.58.3.1	73079,73080
1k5jA	124	56.32	b.121.3.1	68201
1tk1A	260	56.32	d.248.1.1	107066
1t3lA	337	56.56	b.34.2.1,c.37.1.1	106358,106359
2rp4A	76	58.23		
1x47A	98	59.10	d.50.1.1	121680
2zdiC	151	61.70		
2qmlA	198	63.22		
2p5qA	170	67.46		
2fcwB	80	68.18	g.12.1.1,g.12.1.1	133289,133290
2iccA	119	68.45		
1ur1A	378	68.84	c.1.8.3	99804
1pt6A	213	69.01	c.62.1.1	95091
2pofA	227	71.76		
2a8eA	220	74.56	d.296.1.1	126397
1lm4A	194	74.81	d.167.1.1	84626
3b5lB	198	75.60		
1atzA	189	75.91	c.62.1.1	34132
1tr7A	164	80.55	b.2.3.2	119328
2z69A	154	81.71		
1zotA	358	81.82		
1mkeA	152	83.69	b.55.1.4	79231
1gxjA	186	85.45	d.215.1.1	70707