# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.11e-10		
1gg1A	350	0.9795	c.1.10.4	29187
1of8A	370	1.692	c.1.10.4	92819
2rghA	571	2.417		
1n8fA	350	5.814	c.1.10.4	85397
2b9kA	47	6.093		
2rp4A	76	7.690		
2pr3B	51	13.39		
2f20A	240	15.34	d.303.1.1	132791
1fsuA	492	19.00	c.76.1.2	35032
1x47A	98	19.19	d.50.1.1	121680
1t4nA	94	21.43	d.50.1.1	106424
2qztA	111	21.68		
1fnsA	196	22.10	c.62.1.1	34136
2icuA	229	25.10		
1zn6A	227	27.54	d.303.1.1	125373
2fafA	608	27.66		
1wocA	103	27.98		
2p3uA	52	28.07		
1fjsL	52	30.30	g.3.11.1	44226
1t3lA	337	34.52	b.34.2.1,c.37.1.1	106358,106359
2fa1A	160	34.68	d.190.1.2	133182
2q8pA	260	36.64		
1h9oA	112	38.47	d.93.1.1	60837
3ci0I	89	38.86		
1kwmA	402	39.40	c.56.5.1,d.58.3.1	73079,73080
1nlqA	108	42.15	b.121.3.1	85853
1x7vA	99	46.61	d.58.4.11	109501
2bbeA	108	47.29		
1z6eB	52	48.89	g.3.11.1	124519
2nqlA	388	49.80		
1q8bA	105	51.37	d.58.4.6	96201
1zotA	358	51.58		
1zjkA	403	52.86	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
2burA	209	52.92	b.3.6.1	129227
2zdiC	151	53.23		
3b5lB	198	53.30		
2bz6L	53	53.42	g.3.11.1	129553
1mf7A	194	55.48	c.62.1.1	84937
2iccA	119	55.60		
1ijbA	202	56.22	c.62.1.1	71229
1kliL	69	56.69	g.3.11.1	77436
2pofA	227	58.13		
1dxgA	36	58.25	g.41.5.2	45247
1txnA	328	58.75	d.248.1.1	112779
1mkeA	152	59.67	b.55.1.4	79231
1k5jA	124	60.33	b.121.3.1	68201
2vgdA	218	62.35		
2q22A	139	63.40		
2bokL	55	64.55	g.3.11.1	128917
2oxaA	600	66.03		
2prbA	196	66.53		
2z5aB	420	69.49		
1tk1A	260	72.30	d.248.1.1	107066
1yd0A	96	73.30		
1eqfA	280	76.06	a.29.2.1,a.29.2.1	16972,16973
1lm4A	194	76.80	d.167.1.1	84626
1tr7A	164	81.07	b.2.3.2	119328
2bhvA	246	86.82		
2g8jA	339	87.00	d.3.1.3	134773
1h1aA	191	87.14	b.29.1.11	83450