# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	4.27e-12		
2rghA	571	0.6260		
1gg1A	350	1.138	c.1.10.4	29187
1of8A	370	1.450	c.1.10.4	92819
1fsuA	492	1.782	c.76.1.2	35032
1n8fA	350	6.244	c.1.10.4	85397
2p3uA	52	6.422		
2b9kA	47	7.432		
2pr3B	51	8.146		
2qztA	111	12.20		
1zn6A	227	13.75	d.303.1.1	125373
2f20A	240	14.88	d.303.1.1	132791
2fa1A	160	15.92	d.190.1.2	133182
1h9oA	112	16.14	d.93.1.1	60837
2qmlA	198	16.99		
1wocA	103	17.08		
1fjsL	52	17.65	g.3.11.1	44226
2fafA	608	17.73		
1z6eB	52	20.08	g.3.11.1	124519
2prbA	196	21.25		
2z5aB	420	24.87		
2g8jA	339	24.98	d.3.1.3	134773
2rp4A	76	25.44		
1fnsA	196	26.12	c.62.1.1	34136
1zotA	358	26.95		
2gruA	368	31.29		
1widA	130	32.36	b.142.1.2	114667
1i7pA	274	35.92	b.43.4.2,c.25.1.1	66048,66049
2bz6L	53	36.84	g.3.11.1	129553
3nulA	130	38.41	d.110.1.1	40891
2icuA	229	39.04		
1yd0A	96	39.56		
1t3oA	95	39.66		
1i3zA	103	39.94	d.93.1.1	83667
2g1lA	104	40.55	b.26.1.2	134520
3b5lB	198	41.08		
1zjkA	403	42.39	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
2bokL	55	43.78	g.3.11.1	128917
1nlqA	108	44.27	b.121.3.1	85853
2ac1A	541	45.76		
1ifqA	138	47.12	d.110.4.1	62350
3ci0I	89	47.75		
1kwmA	402	48.86	c.56.5.1,d.58.3.1	73079,73080
1pmd	675	48.93		
1mdwA	328	51.06	d.3.1.3	84934
3bdqA	110	51.19		
1ijbA	202	51.55	c.62.1.1	71229
2q22A	139	52.04		
1ndh	272	54.52		
1tqzA	133	54.54	b.55.1.11	119327
3cnvA	162	54.63		
2pstX	74	55.61		
2fcwB	80	56.50	g.12.1.1,g.12.1.1	133289,133290
2i7fA	108	57.57		
3buxB	329	57.75		
2burA	209	60.54	b.3.6.1	129227
1d4tA	104	61.23	d.93.1.1	40537
1pcfA	66	61.47	d.18.1.1	38142
2ooiA	162	62.41		
1dtdA	303	63.59	c.56.5.1	33823
1dykA	394	64.08	b.29.1.4,b.29.1.4	24223,24224
1ur1A	378	65.41	c.1.8.3	99804
1tg0A	68	65.93		
1obdA	306	66.71	d.143.1.1	86767
2btiA	63	69.56		
2bvrH	252	69.84		
1v58A	241	72.51	c.47.1.9,d.17.3.1	108371,108372
1kliL	69	73.05	g.3.11.1	77436
2iccA	119	73.12		
1mkeA	152	78.89	b.55.1.4	79231
2a28A	54	78.91		
1dssG	333	78.94	c.2.1.3,d.81.1.1	30022,39937
1yphE	97	79.52		
2bbeA	108	79.65		
1wl7A	312	80.08	b.67.2.1	120996
2a08A	60	80.90		
1tygB	87	83.39	d.15.3.2	107455
3bwgA	239	83.99		
2ci9A	102	84.15		
2hx0A	154	85.77	d.290.1.3	136830
2cnqA	306	85.81	d.143.1.1	130646
3nul	130	85.90		
2gz6A	388	86.48		
1qxrA	189	87.75	b.82.1.7	96552
1u8fO	335	88.46	c.2.1.3,d.81.1.1	119626,119627
2fkiA	126	88.85	d.198.3.1	133657
1wmvA	54	90.00