# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	4.26e-12		
2rghA	571	0.8580		
2f20A	240	4.666	d.303.1.1	132791
1gg1A	350	4.682	c.1.10.4	29187
2pr3B	51	4.703		
2p3uA	52	5.176		
1z6eB	52	5.774	g.3.11.1	124519
2b9kA	47	5.866		
1fjsL	52	6.447	g.3.11.1	44226
2qztA	111	7.794		
2bz6L	53	11.06	g.3.11.1	129553
2fafA	608	11.56		
2prbA	196	13.83		
2bokL	55	14.35	g.3.11.1	128917
1kliL	69	15.14	g.3.11.1	77436
2gz6A	388	15.37		
1fnsA	196	15.59	c.62.1.1	34136
2qmlA	198	17.92		
1of8A	370	18.31	c.1.10.4	92819
3bdqA	110	18.87		
1wocA	103	19.83		
1zn6A	227	21.03	d.303.1.1	125373
1obdA	306	21.79	d.143.1.1	86767
1fsuA	492	21.90	c.76.1.2	35032
2iccA	119	23.02		
1yd0A	96	24.22		
1t4nA	94	24.25	d.50.1.1	106424
2q8pA	260	27.09		
2cnqA	306	29.09	d.143.1.1	130646
1q8bA	105	31.31	d.58.4.6	96201
1h9oA	112	32.14	d.93.1.1	60837
3ci0I	89	32.76		
1ijbA	202	33.53	c.62.1.1	71229
1wl7A	312	34.60	b.67.2.1	120996
2a8eA	220	35.63	d.296.1.1	126397
2burA	209	35.68	b.3.6.1	129227
2bbeA	108	35.73		
2fa1A	160	36.09	d.190.1.2	133182
1acfA	125	37.51	d.110.1.1	40882
2eaqA	90	38.42		
2z5aB	420	38.46		
3buxB	329	41.41		
1tg0A	68	46.14		
1p16A	395	47.51	b.40.4.6,d.142.2.3	87661,87662
2ac1A	541	50.51		
2nqlA	388	51.33		
1v58A	241	52.48	c.47.1.9,d.17.3.1	108371,108372
1nlqA	108	52.63	b.121.3.1	85853
2icgA	160	52.88		
2fb0A	94	54.76		
2g8jA	339	57.17	d.3.1.3	134773
2oggA	152	57.90		
1acf	125	57.92		
2fcwB	80	58.43	g.12.1.1,g.12.1.1	133289,133290
1fp3A	402	59.83	a.102.1.3	18842
1i3zA	103	60.68	d.93.1.1	83667
2q22A	139	61.41		
1ii7A	333	62.80	d.159.1.4	62415
1uc7A	125	64.01	c.47.1.1	99163
1x7vA	99	64.23	d.58.4.11	109501
1widA	130	64.27	b.142.1.2	114667
1wk8A	194	67.11		
2rp4A	76	69.19		
1eqfA	280	71.33	a.29.2.1,a.29.2.1	16972,16973
1zotA	358	71.41		
2zdiC	151	71.44		
2hx0A	154	72.93	d.290.1.3	136830
3nulA	130	72.95	d.110.1.1	40891
2p5qA	170	74.90		
1gpiA	431	79.17	b.29.1.10	65450
1mf7A	194	79.29	c.62.1.1	84937
1t3oA	95	81.53		
1ur1A	378	85.17	c.1.8.3	99804
1qxrA	189	85.31	b.82.1.7	96552
1b87A	181	85.34	d.108.1.1	40797
2aexA	346	85.76		
1agjA	242	86.06	b.47.1.1	25827
2evrA	246	86.32	b.34.11.3,d.3.1.16	132440,132441
1earA	147	86.36	b.107.1.1,d.58.38.1	64875,64876
1iktA	120	86.81	d.106.1.1	66188
2oxaA	600	87.40		
1kwmA	402	87.89	c.56.5.1,d.58.3.1	73079,73080
2cirA	297	88.17