# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	4.71e-11		
2rghA	571	1.573		
1gg1A	350	6.095	c.1.10.4	29187
2pr3B	51	8.236		
2f20A	240	11.84	d.303.1.1	132791
2p3uA	52	12.19		
1of8A	370	12.27	c.1.10.4	92819
2b9kA	47	13.94		
1fjsL	52	16.96	g.3.11.1	44226
1z6eB	52	17.45	g.3.11.1	124519
1fnsA	196	18.03	c.62.1.1	34136
2qztA	111	20.08		
1fsuA	492	20.24	c.76.1.2	35032
2gz6A	388	20.63		
2bokL	55	23.64	g.3.11.1	128917
2q8pA	260	26.44		
1yd0A	96	29.69		
1t4nA	94	30.02	d.50.1.1	106424
2bz6L	53	31.65	g.3.11.1	129553
1wocA	103	32.64		
2a8eA	220	33.45	d.296.1.1	126397
1q8bA	105	33.78	d.58.4.6	96201
2icuA	229	34.49		
2prbA	196	34.94		
1h9oA	112	36.20	d.93.1.1	60837
2bbeA	108	37.13		
1kliL	69	38.97	g.3.11.1	77436
1nlqA	108	40.50	b.121.3.1	85853
2zdiC	151	41.08		
1zn6A	227	41.99	d.303.1.1	125373
2rp4A	76	42.46		
1ijbA	202	44.72	c.62.1.1	71229
2icgA	160	44.93		
3ci0I	89	48.66		
2oxaA	600	50.92		
2nqlA	388	51.75		
3buxB	329	55.29		
2iccA	119	56.01		
1obdA	306	59.09	d.143.1.1	86767
1x7vA	99	59.84	d.58.4.11	109501
2fb0A	94	61.17		
1eqfA	280	62.67	a.29.2.1,a.29.2.1	16972,16973
1k5jA	124	62.68	b.121.3.1	68201
1ur1A	378	63.46	c.1.8.3	99804
1n8fA	350	64.23	c.1.10.4	85397
1t3lA	337	65.23	b.34.2.1,c.37.1.1	106358,106359
1gxjA	186	65.91	d.215.1.1	70707
2pofA	227	67.74		
2qmlA	198	68.03		
1h1aA	191	69.23	b.29.1.11	83450
1uc7A	125	70.23	c.47.1.1	99163
2cnqA	306	71.36	d.143.1.1	130646
2fa1A	160	71.88	d.190.1.2	133182
1v54H	85	73.11	a.51.1.1	100329
1ii7A	333	73.63	d.159.1.4	62415
1tk1A	260	74.02	d.248.1.1	107066
2af4C	333	75.25	c.77.1.5	126656
2burA	209	76.03	b.3.6.1	129227
2vgdA	218	78.30		
1mf7A	194	81.57	c.62.1.1	84937
2fafA	608	85.11		
1kwmA	402	87.94	c.56.5.1,d.58.3.1	73079,73080