# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.36e-10		
2rghA	571	1.683		
1gg1A	350	4.512	c.1.10.4	29187
1of8A	370	6.986	c.1.10.4	92819
2qztA	111	7.420		
2b9kA	47	10.35		
2p3uA	52	10.96		
2pr3B	51	11.22		
1fjsL	52	13.09	g.3.11.1	44226
2iccA	119	13.59		
1tg0A	68	14.97		
1z6eB	52	15.62	g.3.11.1	124519
2bz6L	53	17.08	g.3.11.1	129553
2qmlA	198	18.11		
2f20A	240	18.43	d.303.1.1	132791
1wocA	103	19.94		
1fsuA	492	22.43	c.76.1.2	35032
1t3lA	337	22.46	b.34.2.1,c.37.1.1	106358,106359
2rp4A	76	22.73		
2prbA	196	23.50		
1kliL	69	23.55	g.3.11.1	77436
1n8fA	350	26.33	c.1.10.4	85397
3bdqA	110	26.36		
1fnsA	196	26.74	c.62.1.1	34136
2fafA	608	29.42		
1h9oA	112	29.55	d.93.1.1	60837
1yd0A	96	30.92		
2gruA	368	32.01		
1t4nA	94	32.76	d.50.1.1	106424
2gz6A	388	37.71		
2fa1A	160	38.75	d.190.1.2	133182
1zn6A	227	39.41	d.303.1.1	125373
1wl7A	312	39.43	b.67.2.1	120996
2bokL	55	39.67	g.3.11.1	128917
2bhvA	246	41.01		
1mf7A	194	46.49	c.62.1.1	84937
1acfA	125	47.31	d.110.1.1	40882
1pz4A	116	49.85	d.106.1.1	95400
2q8pA	260	50.69		
1obdA	306	50.77	d.143.1.1	86767
3ci0I	89	51.73		
2z5aB	420	51.95		
2p5qA	170	54.59		
2p19A	149	54.93		
3bwgA	239	60.35		
1p16A	395	62.79	b.40.4.6,d.142.2.3	87661,87662
1t4oA	117	62.85	d.50.1.1	106425
2hx0A	154	65.36	d.290.1.3	136830
2fcwB	80	65.62	g.12.1.1,g.12.1.1	133289,133290
1ijbA	202	65.90	c.62.1.1	71229
2ot9A	180	68.32		
1sjgA	112	69.31	b.33.1.1	105647
1ur1A	378	71.07	c.1.8.3	99804
2cnqA	306	71.29	d.143.1.1	130646
2a28A	54	74.34		
2q22A	139	74.35		
1fp3A	402	75.35	a.102.1.3	18842
3cnvA	162	76.55		
1wk8A	194	77.02		
1pcfA	66	77.88	d.18.1.1	38142
2g8jA	339	80.18	d.3.1.3	134773
2burA	209	80.73	b.3.6.1	129227
1kwmA	402	82.48	c.56.5.1,d.58.3.1	73079,73080
1nlqA	108	85.71	b.121.3.1	85853
3buxB	329	86.48		
1m93C	41	87.70