# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bidA 64 1.74e-11 2vccA 891 3.616 2eaqA 90 6.897 1obdA 306 7.153 d.143.1.1 86767 1ojrA 274 7.172 c.74.1.1 93147 2dkfA 431 8.097 1gg1A 350 9.488 c.1.10.4 29187 1zxmA 400 11.76 1of8A 370 12.28 c.1.10.4 92819 2bhvA 246 12.75 1ndh 272 13.22 2qztA 111 13.45 2b9kA 47 13.47 2nqlA 388 16.17 1nycA 111 16.29 b.61.2.2 92336 2q8pA 260 16.40 1kliL 69 17.40 g.3.11.1 77436 1nmmB 286 17.48 c.68.1.2 80662 3c8mA 331 18.01 1go7P 462 20.10 b.80.7.1,d.92.1.6 76245,76246 1h9oA 112 20.23 d.93.1.1 60837 1pq4A 291 21.78 c.92.2.2 94995 2cirA 297 24.52 1ggzA 148 25.01 a.39.1.5 70176 1brmA 367 25.76 c.2.1.3,d.81.1.1 30030,39945 2durA 253 26.39 2icgA 160 27.13 1vf8A 377 27.95 c.1.8.5,d.26.3.1 120029,120030 1y4wA 518 28.26 b.29.1.19,b.67.2.3 116470,116471 2p3uA 52 28.62 2vr4A 846 28.70 1fjsL 52 32.72 g.3.11.1 44226 1t92A 116 34.09 d.24.1.3 112326 1dfaA 454 34.80 b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 1jv1A 505 35.89 c.68.1.5 71892 2pr3B 51 36.24 1z6eB 52 36.24 g.3.11.1 124519 3c0bA 334 36.32 1a8dA 452 37.65 b.29.1.6,b.42.4.2 24262,25607 2bokL 55 37.97 g.3.11.1 128917 1aipA 405 38.79 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2qa1A 500 38.98 1dymA 402 39.08 b.29.1.10 24304 2ot9A 180 42.46 2zdiC 151 43.37 1m5q1 130 43.60 2pvuA 272 44.19 2dt4A 143 45.21 2p52A 196 45.79 1j1tA 233 46.09 b.29.1.18 90771 2v9lA 274 46.57 2dpmA 284 46.78 c.66.1.28 34246 1qx4A 274 46.86 b.43.4.2,c.25.1.1 104624,104625 1zjkA 403 47.28 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2qmlA 198 47.45 2f3yA 148 48.70 2v3uA 265 49.29 1zn6A 227 49.38 d.303.1.1 125373 1t4oA 117 50.93 d.50.1.1 106425 1t4nA 94 51.06 d.50.1.1 106424 3bbjA 272 51.14 1tz7A 505 52.06 c.1.8.1 119394 1xeoA 168 52.68 d.167.1.1 121913 1tk1A 260 52.99 d.248.1.1 107066 1llaA 628 53.81 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1fs0E 138 54.04 a.2.10.1,b.93.1.1 59997,59998 1fnsA 196 54.96 c.62.1.1 34136 1q7eA 428 54.97 c.123.1.1 96035 3bs1A 103 54.97 2bz6L 53 55.39 g.3.11.1 129553 1efdN 266 56.02 c.92.2.1 35597 2rckA 225 56.07 2amyA 246 56.07 c.108.1.10 127026 1anv 356 56.41 1kcbA 340 56.74 b.6.1.3,b.6.1.3 90951,90952 1fp3A 402 58.21 a.102.1.3 18842 1bqyA 234 59.11 b.47.1.2 26332 1yd0A 96 59.42 1kwmA 402 59.93 c.56.5.1,d.58.3.1 73079,73080 1rec 201 61.58 1l1qA 186 62.48 c.61.1.1 77653 2cnqA 306 62.54 d.143.1.1 130646 1cghA 224 64.32 b.47.1.2 26290 1or8A 340 65.06 c.66.1.6 93451 1s5aA 150 65.49 d.17.4.10 98525 1m93C 41 67.81 2qgyA 391 70.69 2ho3A 325 73.34 2ek6A 95 76.22 2vgeA 229 76.66 3pcgM 238 76.96 b.3.6.1 22742 1y1xA 191 77.26 a.39.1.8 116374 2e5fA 325 78.68 2v1rA 80 79.26 2og9A 393 80.64 2al1A 436 81.94 c.1.11.1,d.54.1.1 126949,126950 1egnA 434 82.80 b.29.1.10 59411 1knbA 196 84.19 b.21.1.1 23841 1xk7A 408 84.75 c.123.1.1 122071 1vhoA 346 85.19 b.49.3.1,c.56.5.4 100694,100695 1ro5A 201 87.03 d.108.1.3 105023 1cl8A 276 88.12 c.52.1.1 33230 1h4wA 224 89.35 b.47.1.2 65622 1u0tA 307 89.90 e.52.1.1 107567