# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	9.01e-11		
2rghA	571	1.403		
1gg1A	350	5.557	c.1.10.4	29187
1of8A	370	6.600	c.1.10.4	92819
2b9kA	47	6.819		
1fjsL	52	8.190	g.3.11.1	44226
2pr3B	51	8.880		
2p3uA	52	9.546		
1z6eB	52	9.806	g.3.11.1	124519
2qztA	111	13.01		
2bokL	55	14.67	g.3.11.1	128917
2f20A	240	14.82	d.303.1.1	132791
1fsuA	492	16.23	c.76.1.2	35032
2bz6L	53	17.76	g.3.11.1	129553
1kliL	69	22.89	g.3.11.1	77436
2fafA	608	23.25		
1fnsA	196	24.17	c.62.1.1	34136
2rp4A	76	27.67		
1t4nA	94	31.03	d.50.1.1	106424
1zn6A	227	32.33	d.303.1.1	125373
1n8fA	350	33.54	c.1.10.4	85397
3ci0I	89	34.50		
2q8pA	260	34.69		
1wocA	103	40.37		
1mf7A	194	41.11	c.62.1.1	84937
1yd0A	96	41.19		
2oxaA	600	41.20		
2gz6A	388	42.82		
2qmlA	198	43.60		
1obdA	306	43.62	d.143.1.1	86767
2icuA	229	43.81		
2iccA	119	45.53		
2prbA	196	48.04		
1h9oA	112	49.48	d.93.1.1	60837
1nlqA	108	50.97	b.121.3.1	85853
2burA	209	51.08	b.3.6.1	129227
1t3lA	337	53.71	b.34.2.1,c.37.1.1	106358,106359
1tk1A	260	64.05	d.248.1.1	107066
1k5jA	124	64.75	b.121.3.1	68201
1xe0A	114	65.08	b.121.3.1	115197
1ijbA	202	65.28	c.62.1.1	71229
1kwmA	402	65.33	c.56.5.1,d.58.3.1	73079,73080
2bhvA	246	66.70		
3b5lB	198	69.71		
2z5aB	420	69.94		
3bdqA	110	70.61		
2cnqA	306	72.48	d.143.1.1	130646
2fa1A	160	72.91	d.190.1.2	133182
1t4oA	117	73.25	d.50.1.1	106425
2nqlA	388	76.19		
1x7vA	99	78.80	d.58.4.11	109501
2q22A	139	80.30		
1ur1A	378	80.74	c.1.8.3	99804
2fcwB	80	81.30	g.12.1.1,g.12.1.1	133289,133290
2a8eA	220	81.63	d.296.1.1	126397
1tr7A	164	85.07	b.2.3.2	119328
1fp3A	402	85.60	a.102.1.3	18842
2zdiC	151	85.93		
2vgdA	218	86.31		
2pofA	227	89.92