# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.60e-10		
2rghA	571	2.687		
1gg1A	350	4.015	c.1.10.4	29187
2b9kA	47	4.197		
2pr3B	51	7.083		
1of8A	370	7.980	c.1.10.4	92819
1fjsL	52	10.30	g.3.11.1	44226
2p3uA	52	11.26		
2rp4A	76	12.16		
1z6eB	52	15.02	g.3.11.1	124519
1fsuA	492	15.90	c.76.1.2	35032
2bokL	55	17.11	g.3.11.1	128917
1fnsA	196	20.13	c.62.1.1	34136
2bz6L	53	22.14	g.3.11.1	129553
1kliL	69	23.62	g.3.11.1	77436
2f20A	240	26.70	d.303.1.1	132791
2qztA	111	26.90		
1t4nA	94	28.64	d.50.1.1	106424
1h9oA	112	29.84	d.93.1.1	60837
2q8pA	260	32.49		
1n8fA	350	37.37	c.1.10.4	85397
1mf7A	194	39.48	c.62.1.1	84937
1wocA	103	39.96		
2icuA	229	42.35		
1nlqA	108	43.84	b.121.3.1	85853
1zn6A	227	44.32	d.303.1.1	125373
1x47A	98	44.36	d.50.1.1	121680
2burA	209	47.67	b.3.6.1	129227
2qmlA	198	48.21		
2iccA	119	50.96		
2fafA	608	51.70		
2prbA	196	53.72		
1ijbA	202	55.57	c.62.1.1	71229
2fa1A	160	58.71	d.190.1.2	133182
1t3lA	337	59.53	b.34.2.1,c.37.1.1	106358,106359
3ci0I	89	62.02		
1yd0A	96	62.44		
2q22A	139	62.60		
1x7vA	99	63.15	d.58.4.11	109501
2a8eA	220	63.26	d.296.1.1	126397
1k5jA	124	67.64	b.121.3.1	68201
1eqfA	280	67.72	a.29.2.1,a.29.2.1	16972,16973
2bbeA	108	68.50		
2zdiC	151	68.68		
1ur1A	378	68.87	c.1.8.3	99804
1dxgA	36	70.08	g.41.5.2	45247
3buxB	329	71.07		
2icgA	160	71.14		
2nqlA	388	74.31		
1ysjA	404	78.08	c.56.5.4,d.58.19.1	123975,123976
1tr7A	164	81.81	b.2.3.2	119328
2z5aB	420	82.28		
2oxaA	600	83.48		
1atzA	189	84.05	c.62.1.1	34132
1obdA	306	84.59	d.143.1.1	86767
1n3yA	198	85.22	c.62.1.1	79976
2gz6A	388	86.06		
2pofA	227	89.46