# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.79e-10		
2rghA	571	1.860		
2pr3B	51	5.333		
1gg1A	350	7.345	c.1.10.4	29187
1fjsL	52	8.500	g.3.11.1	44226
2p3uA	52	9.357		
2b9kA	47	9.597		
1fsuA	492	13.29	c.76.1.2	35032
1z6eB	52	16.09	g.3.11.1	124519
1of8A	370	16.71	c.1.10.4	92819
2rp4A	76	16.83		
2bokL	55	19.39	g.3.11.1	128917
1fnsA	196	22.56	c.62.1.1	34136
2qztA	111	26.49		
2prbA	196	28.04		
1h9oA	112	28.40	d.93.1.1	60837
1nlqA	108	29.27	b.121.3.1	85853
2fafA	608	29.28		
1yd0A	96	31.70		
1zn6A	227	33.67	d.303.1.1	125373
2f20A	240	37.81	d.303.1.1	132791
2qmlA	198	38.26		
2icuA	229	38.91		
2bz6L	53	41.10	g.3.11.1	129553
2fa1A	160	43.85	d.190.1.2	133182
2gz6A	388	44.47		
1n8fA	350	48.40	c.1.10.4	85397
1wocA	103	49.21		
2q8pA	260	53.09		
1eqfA	280	55.50	a.29.2.1,a.29.2.1	16972,16973
1kliL	69	56.22	g.3.11.1	77436
1obdA	306	57.29	d.143.1.1	86767
1ijbA	202	57.95	c.62.1.1	71229
2z5aB	420	58.56		
1dxgA	36	60.52	g.41.5.2	45247
1ur1A	378	62.03	c.1.8.3	99804
3ci0I	89	64.44		
1t4nA	94	65.16	d.50.1.1	106424
2oxaA	600	68.83		
2fcwB	80	70.88	g.12.1.1,g.12.1.1	133289,133290
2cnqA	306	71.03	d.143.1.1	130646
2burA	209	71.95	b.3.6.1	129227
3buxB	329	74.57		
1t3oA	95	74.72		
2q22A	139	78.93		
2gruA	368	86.51		
1ysjA	404	86.75	c.56.5.4,d.58.19.1	123975,123976
1mf7A	194	88.02	c.62.1.1	84937
2hx0A	154	88.08	d.290.1.3	136830
2ac1A	541	89.14