# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.29e-10		
2rghA	571	1.524		
2b9kA	47	3.630		
2pr3B	51	5.255		
2p3uA	52	6.129		
1fjsL	52	6.342	g.3.11.1	44226
1gg1A	350	7.563	c.1.10.4	29187
1kliL	69	7.912	g.3.11.1	77436
1z6eB	52	8.388	g.3.11.1	124519
2bz6L	53	8.768	g.3.11.1	129553
2bokL	55	10.68	g.3.11.1	128917
1of8A	370	13.47	c.1.10.4	92819
2qztA	111	14.23		
2prbA	196	21.90		
2f20A	240	22.47	d.303.1.1	132791
1fnsA	196	23.64	c.62.1.1	34136
2ac1A	541	24.52		
1h9oA	112	26.56	d.93.1.1	60837
2rp4A	76	27.95		
2z5aB	420	29.55		
2fafA	608	29.58		
2icgA	160	33.85		
1yd0A	96	34.50		
1wocA	103	34.60		
1zn6A	227	40.24	d.303.1.1	125373
2icuA	229	40.52		
2fa1A	160	41.05	d.190.1.2	133182
1fsuA	492	41.95	c.76.1.2	35032
1agjA	242	45.12	b.47.1.1	25827
1ijbA	202	48.84	c.62.1.1	71229
1eqfA	280	50.63	a.29.2.1,a.29.2.1	16972,16973
1q8bA	105	50.67	d.58.4.6	96201
1t4nA	94	54.31	d.50.1.1	106424
2gruA	368	55.69		
1obdA	306	56.54	d.143.1.1	86767
2gz6A	388	56.97		
2oxaA	600	57.06		
2bbeA	108	58.55		
2qmlA	198	64.26		
3ci0I	89	67.06		
1kwmA	402	69.93	c.56.5.1,d.58.3.1	73079,73080
2iccA	119	71.13		
1mf7A	194	73.89	c.62.1.1	84937
2vgdA	218	75.69		
1i3zA	103	76.75	d.93.1.1	83667
1n8fA	350	77.17	c.1.10.4	85397
2dcyA	185	78.17	b.29.1.11	131388
2cirA	297	79.66		
1h1aA	191	81.17	b.29.1.11	83450
2g8jA	339	85.88	d.3.1.3	134773
2cnqA	306	88.48	d.143.1.1	130646