# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.60e-08		
2rghA	571	9.036		
2a8eA	220	14.16	d.296.1.1	126397
1t4nA	94	26.11	d.50.1.1	106424
1fnsA	196	26.76	c.62.1.1	34136
2gruA	368	28.26		
1tk1A	260	39.14	d.248.1.1	107066
1bqyA	234	42.46	b.47.1.2	26332
1mwvA	714	52.54	a.93.1.3,a.93.1.3	85161,85162
2fkiA	126	65.96	d.198.3.1	133657
2qmlA	198	67.53		
2pr3B	51	71.37		
2b9kA	47	80.89		
1agjA	242	84.43	b.47.1.1	25827