# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	3.90e-07		
2rghA	571	4.153		
1t4nA	94	27.19	d.50.1.1	106424
2bokL	55	30.02	g.3.11.1	128917
1tk1A	260	31.78	d.248.1.1	107066
2b9kA	47	32.68		
1x47A	98	36.07	d.50.1.1	121680
2f20A	240	38.10	d.303.1.1	132791
1z6eB	52	39.26	g.3.11.1	124519
1t4oA	117	44.05	d.50.1.1	106425
3ci0I	89	44.99		
1fjsL	52	47.01	g.3.11.1	44226
1x7vA	99	53.04	d.58.4.11	109501
1kliL	69	53.42	g.3.11.1	77436
1txnA	328	55.77	d.248.1.1	112779
2p3uA	52	56.65		
2bz6L	53	57.49	g.3.11.1	129553
1amxA	180	57.63	b.2.3.1	22410
2bbeA	108	59.12		
1fnsA	196	59.81	c.62.1.1	34136
1nlqA	108	61.23	b.121.3.1	85853
2pr3B	51	61.80		
1b87A	181	62.22	d.108.1.1	40797
1h5zA	455	70.54	a.104.1.1	90622
1mf7A	194	76.25	c.62.1.1	84937
1k5jA	124	76.32	b.121.3.1	68201
2a8eA	220	81.51	d.296.1.1	126397
2icgA	160	83.05		
1tr7A	164	84.42	b.2.3.2	119328
1yd0A	96	89.99