# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	4.17e-06		
1mgtA	174	4.598	a.4.2.1,c.55.7.1	16078,33753
1x8hA	228	6.294	d.157.1.1	114961
2yztA	67	9.200		
1t4nA	94	9.832	d.50.1.1	106424
1ko3A	230	11.01	d.157.1.1	90974
2j01Q	141	17.03		
1jjtA	228	17.33	d.157.1.1	63139
1jysA	242	17.58	c.56.2.1	77216
1gg1A	350	17.86	c.1.10.4	29187
1ne9A	335	20.97	d.108.1.4,d.108.1.4	91839,91840
1x8gA	227	22.10	d.157.1.1	114960
2ek6A	95	22.22		
1m2xA	223	24.97	d.157.1.1	84764
1jjeA	222	25.16	d.157.1.1	63117
1mqoA	227	27.12	d.157.1.1	103846
1mdlA	359	27.58	c.1.11.2,d.54.1.1	29247,38891
1srvA	145	27.93	c.8.5.1	30817
1kid	203	29.50		
2fhxA	246	32.38		
1kidA	203	35.43	c.8.5.1	30771
1eovA	487	35.68	b.40.4.1,d.104.1.1	25239,40760
1bovA	69	39.44	b.40.2.1	25070
2ek1A	95	39.59		
2fiwA	172	39.75	d.108.1.1	133539
2qdsA	227	41.96		
1a7tA	232	42.28	d.157.1.1	42041
1z5nA	242	42.55		
2gl5A	410	43.22	c.1.11.2,d.54.1.1	135336,135337
1djrD	103	44.07	b.40.2.1	24865
1vhsA	175	45.34	d.108.1.1	100698
1stzA	338	46.28	a.4.5.51,d.110.2.3	106009,106010
2qgyA	391	47.24		
1z5oA	242	48.84		
1n8fA	350	48.92	c.1.10.4	85397
1zosA	230	49.00		
1kmdA	117	51.36	d.189.1.1	72744
2pa2A	151	51.46		
1euvA	221	53.27	d.3.1.7	37133
2p14A	192	54.02		
1zn8A	180	54.63	c.61.1.1	125376
1ztcA	221	57.07	d.157.1.11	125635
1mdl	359	58.56		
2az4A	429	59.91	d.157.1.10	127597
3bjuA	521	62.16		
1txdA	385	67.82	a.87.1.1,b.55.1.1	107422,107423
2dy0A	190	68.31		
1r9gA	216	69.02	c.23.16.1	97258
1c4qA	69	69.78	b.40.2.1	25010
2gdqA	382	70.22	c.1.11.2,d.54.1.1	135020,135021
1zb9A	143	70.40		
1brtA	277	70.62	c.69.1.12	34699
1vqoH	171	72.26	d.41.4.1	120369
2e5yA	133	75.45		
2pozA	392	75.54		
1ihp	438	78.27		
1y9wA	140	80.67	d.108.1.1	122783
1u9yA	284	82.11	c.61.1.2,c.61.1.2	119655,119656
1wteA	272	84.04	c.52.1.29	114876
2v7bA	529	85.29		
3beuA	224	85.68		
1wduA	245	86.28	d.151.1.1	109286
1wxcB	134	88.15		
3c26A	266	88.43		
1lt5D	103	88.43	b.40.2.1	24875
2q3uA	383	88.44	d.126.1.6	139809
1vybA	238	89.60	d.151.1.1	108897