PFRMAT RR TARGET T0472 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa7str2_7near3nsep5.47.data03.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 MSGWYELSKSSNDQFKFVLKAGNGEVILTSELYTGKSGAMNGIESVQTNS PIEAR 4 13 0 8 0.300437 4 14 0 8 0.320876 4 15 0 8 0.494213 4 16 0 8 0.634066 4 17 0 8 0.922226 4 18 0 8 0.971405 4 19 0 8 0.964705 4 20 0 8 0.9192 4 21 0 8 0.884272 4 22 0 8 0.762901 4 23 0 8 0.542623 4 24 0 8 0.470784 4 25 0 8 0.384464 4 26 0 8 0.555416 4 27 0 8 0.719907 4 28 0 8 0.893803 4 29 0 8 0.878481 4 30 0 8 0.806208 4 31 0 8 0.733946 4 32 0 8 0.598279 4 33 0 8 0.561756 4 34 0 8 0.418854 4 35 0 8 0.432424 4 36 0 8 0.459155 4 37 0 8 0.399761 4 38 0 8 0.399303 4 39 0 8 0.669091 4 40 0 8 0.358229 4 41 0 8 0.517186 4 42 0 8 0.5507 4 43 0 8 0.604561 4 44 0 8 0.329439 4 45 0 8 0.636205 4 46 0 8 0.575567 4 47 0 8 0.510793 4 48 0 8 0.37432 4 49 0 8 0.52661 4 50 0 8 0.466011 4 51 0 8 0.404635 4 52 0 8 0.377445 5 14 0 8 0.360403 5 15 0 8 0.703962 5 16 0 8 0.853264 5 17 0 8 0.97619 5 18 0 8 0.990807 5 19 0 8 0.986557 5 20 0 8 0.933046 5 21 0 8 0.898506 5 22 0 8 0.641881 5 23 0 8 0.463458 5 24 0 8 0.489333 5 25 0 8 0.497074 5 26 0 8 0.71761 5 27 0 8 0.891293 5 28 0 8 0.964763 5 29 0 8 0.932864 5 30 0 8 0.872805 5 31 0 8 0.7684 5 32 0 8 0.641077 5 33 0 8 0.664839 5 34 0 8 0.431435 5 35 0 8 0.437974 5 36 0 8 0.437005 5 37 0 8 0.339031 5 38 0 8 0.394696 5 39 0 8 0.799665 5 40 0 8 0.359045 5 41 0 8 0.553063 5 42 0 8 0.674041 5 43 0 8 0.762325 5 44 0 8 0.346695 5 45 0 8 0.754617 5 46 0 8 0.74543 5 47 0 8 0.579389 5 48 0 8 0.3412 5 49 0 8 0.567751 5 50 0 8 0.493627 5 51 0 8 0.354665 5 52 0 8 0.357249 6 15 0 8 0.654387 6 16 0 8 0.897098 6 17 0 8 0.942816 6 18 0 8 0.969239 6 19 0 8 0.927854 6 20 0 8 0.810882 6 21 0 8 0.618292 6 22 0 8 0.398075 6 23 0 8 0.42126 6 24 0 8 0.583693 6 25 0 8 0.590355 6 26 0 8 0.563856 6 27 0 8 0.756019 6 28 0 8 0.920184 6 29 0 8 0.87848 6 30 0 8 0.751239 6 31 0 8 0.675414 6 32 0 8 0.487304 6 33 0 8 0.463499 6 39 0 8 0.462125 6 41 0 8 0.325092 6 42 0 8 0.365236 6 43 0 8 0.410571 6 45 0 8 0.392278 6 46 0 8 0.331446 6 49 0 8 0.354467 7 16 0 8 0.965317 7 17 0 8 0.989687 7 18 0 8 0.986378 7 19 0 8 0.970157 7 20 0 8 0.795721 7 21 0 8 0.761943 7 22 0 8 0.300869 7 23 0 8 0.478066 7 24 0 8 0.770629 7 25 0 8 0.782635 7 26 0 8 0.835265 7 27 0 8 0.925324 7 28 0 8 0.968546 7 29 0 8 0.873824 7 30 0 8 0.80815 7 31 0 8 0.629466 7 32 0 8 0.612164 7 33 0 8 0.694485 7 34 0 8 0.389229 7 35 0 8 0.36662 7 36 0 8 0.33203 7 38 0 8 0.40139 7 39 0 8 0.748652 7 41 0 8 0.549657 7 42 0 8 0.679215 7 43 0 8 0.758421 7 45 0 8 0.686098 7 46 0 8 0.662691 7 47 0 8 0.402728 7 49 0 8 0.448093 7 50 0 8 0.348915 7 52 0 8 0.384208 8 17 0 8 0.956123 8 18 0 8 0.925274 8 19 0 8 0.818259 8 20 0 8 0.530486 8 21 0 8 0.462389 8 23 0 8 0.342897 8 24 0 8 0.655761 8 25 0 8 0.681977 8 26 0 8 0.620938 8 27 0 8 0.72324 8 28 0 8 0.82731 8 29 0 8 0.709913 8 30 0 8 0.562294 8 31 0 8 0.414298 8 32 0 8 0.364388 8 33 0 8 0.426635 8 39 0 8 0.475124 8 41 0 8 0.301441 8 42 0 8 0.355535 8 43 0 8 0.439 8 45 0 8 0.394979 8 46 0 8 0.330992 9 18 0 8 0.57498 9 19 0 8 0.344365 9 23 0 8 0.315286 9 24 0 8 0.471806 9 25 0 8 0.459954 9 26 0 8 0.366888 9 27 0 8 0.391961 9 28 0 8 0.490028 9 29 0 8 0.420899 10 23 0 8 0.395269 10 24 0 8 0.49674 10 25 0 8 0.457281 10 26 0 8 0.31737 10 28 0 8 0.391867 10 29 0 8 0.325285 11 21 0 8 0.308185 11 23 0 8 0.444438 11 24 0 8 0.472408 11 25 0 8 0.382105 12 21 0 8 0.409972 12 22 0 8 0.495444 12 23 0 8 0.546167 12 24 0 8 0.321138 13 22 0 8 0.753 13 23 0 8 0.68591 13 24 0 8 0.404599 13 28 0 8 0.425117 13 29 0 8 0.563821 13 30 0 8 0.487023 13 31 0 8 0.467862 13 32 0 8 0.377606 13 33 0 8 0.352902 13 49 0 8 0.338841 13 50 0 8 0.320335 13 51 0 8 0.318037 14 23 0 8 0.705307 14 24 0 8 0.412081 14 27 0 8 0.347773 14 28 0 8 0.812292 14 29 0 8 0.854466 14 30 0 8 0.795235 14 31 0 8 0.72384 14 32 0 8 0.603808 14 33 0 8 0.566929 14 34 0 8 0.371082 14 35 0 8 0.345613 14 39 0 8 0.394487 14 45 0 8 0.303548 14 49 0 8 0.350634 14 50 0 8 0.334776 14 51 0 8 0.327288 14 52 0 8 0.302086 15 24 0 8 0.393907 15 25 0 8 0.373665 15 26 0 8 0.667693 15 27 0 8 0.776226 15 28 0 8 0.967318 15 29 0 8 0.951696 15 30 0 8 0.941019 15 31 0 8 0.869661 15 32 0 8 0.790764 15 33 0 8 0.804401 15 34 0 8 0.582019 15 35 0 8 0.537628 15 36 0 8 0.4576 15 37 0 8 0.341921 15 38 0 8 0.413212 15 39 0 8 0.811642 15 40 0 8 0.321821 15 41 0 8 0.522976 15 42 0 8 0.627828 15 43 0 8 0.697408 15 45 0 8 0.739031 15 46 0 8 0.654742 15 47 0 8 0.400161 15 49 0 8 0.477293 15 50 0 8 0.443401 15 51 0 8 0.346339 15 52 0 8 0.361379 16 25 0 8 0.457026 16 26 0 8 0.62206 16 27 0 8 0.835124 16 28 0 8 0.982917 16 29 0 8 0.975716 16 30 0 8 0.952067 16 31 0 8 0.884357 16 32 0 8 0.776131 16 33 0 8 0.74675 16 34 0 8 0.529308 16 35 0 8 0.464203 16 36 0 8 0.367031 16 38 0 8 0.301421 16 39 0 8 0.68152 16 41 0 8 0.360745 16 42 0 8 0.479512 16 43 0 8 0.542422 16 45 0 8 0.586692 16 46 0 8 0.512202 16 47 0 8 0.304465 16 49 0 8 0.395559 16 50 0 8 0.369761 16 51 0 8 0.317238 16 52 0 8 0.330993 17 26 0 8 0.850393 17 27 0 8 0.94125 17 28 0 8 0.989606 17 29 0 8 0.969912 17 30 0 8 0.9398 17 31 0 8 0.826818 17 32 0 8 0.739773 17 33 0 8 0.823952 17 34 0 8 0.512714 17 35 0 8 0.460838 17 36 0 8 0.40506 17 38 0 8 0.378255 17 39 0 8 0.848256 17 40 0 8 0.311835 17 41 0 8 0.600398 17 42 0 8 0.738888 17 43 0 8 0.81269 17 45 0 8 0.809484 17 46 0 8 0.807239 17 47 0 8 0.453665 17 49 0 8 0.432074 17 50 0 8 0.37303 17 52 0 8 0.310389 18 27 0 8 0.939886 18 28 0 8 0.988294 18 29 0 8 0.969016 18 30 0 8 0.928345 18 31 0 8 0.811667 18 32 0 8 0.736372 18 33 0 8 0.755865 18 34 0 8 0.47349 18 35 0 8 0.412988 18 38 0 8 0.308615 18 39 0 8 0.682266 18 41 0 8 0.378642 18 42 0 8 0.506437 18 43 0 8 0.572006 18 45 0 8 0.547502 18 46 0 8 0.529592 18 49 0 8 0.304102 18 52 0 8 0.316247 19 28 0 8 0.979856 19 29 0 8 0.908254 19 30 0 8 0.849999 19 31 0 8 0.633133 19 32 0 8 0.585873 19 33 0 8 0.693914 19 34 0 8 0.388914 19 35 0 8 0.332799 19 38 0 8 0.326273 19 39 0 8 0.769044 19 41 0 8 0.484377 19 42 0 8 0.671099 19 43 0 8 0.852869 19 45 0 8 0.743427 19 46 0 8 0.858938 19 47 0 8 0.392336 19 49 0 8 0.347475 19 50 0 8 0.318129 19 52 0 8 0.32395 20 29 0 8 0.652257 20 30 0 8 0.571002 20 31 0 8 0.379036 20 32 0 8 0.312333 20 33 0 8 0.412487 20 39 0 8 0.423384 20 43 0 8 0.389681 20 45 0 8 0.379121 20 46 0 8 0.330722 21 30 0 8 0.59077 21 31 0 8 0.419391 21 32 0 8 0.368948 21 33 0 8 0.494147 21 39 0 8 0.533537 21 41 0 8 0.362651 21 42 0 8 0.373836 21 43 0 8 0.559282 21 45 0 8 0.491162 21 46 0 8 0.453483 21 47 0 8 0.303933 21 49 0 8 0.403681 21 50 0 8 0.418398 21 51 0 8 0.340654 21 52 0 8 0.420449 22 31 0 8 0.303037 22 32 0 8 0.321369 22 33 0 8 0.383306 22 49 0 8 0.392054 22 50 0 8 0.337506 22 51 0 8 0.323497 22 52 0 8 0.400205 23 32 0 8 0.411614 23 33 0 8 0.457459 23 34 0 8 0.331311 23 35 0 8 0.316467 23 38 0 8 0.310205 23 39 0 8 0.379842 23 41 0 8 0.342096 23 45 0 8 0.339483 23 48 0 8 0.315965 23 49 0 8 0.433286 23 50 0 8 0.37376 23 51 0 8 0.402287 23 52 0 8 0.439403 24 33 0 8 0.62908 24 34 0 8 0.488928 24 35 0 8 0.483115 24 36 0 8 0.453279 24 37 0 8 0.41831 24 38 0 8 0.404371 24 39 0 8 0.470666 24 40 0 8 0.306376 24 41 0 8 0.367382 24 42 0 8 0.331665 24 45 0 8 0.436599 24 46 0 8 0.317305 24 47 0 8 0.417094 24 48 0 8 0.444662 24 49 0 8 0.544586 24 50 0 8 0.562006 24 51 0 8 0.541533 24 52 0 8 0.50604 25 34 0 8 0.488852 25 35 0 8 0.446731 25 36 0 8 0.393016 25 37 0 8 0.335925 25 38 0 8 0.342131 25 39 0 8 0.617365 25 41 0 8 0.375531 25 42 0 8 0.384356 25 43 0 8 0.447308 25 45 0 8 0.542865 25 46 0 8 0.424931 25 47 0 8 0.398778 25 48 0 8 0.31568 25 49 0 8 0.469576 25 50 0 8 0.466213 25 51 0 8 0.422198 25 52 0 8 0.417769 26 35 0 8 0.527 26 36 0 8 0.441366 26 37 0 8 0.357176 26 38 0 8 0.405886 26 39 0 8 0.801773 26 41 0 8 0.51196 26 42 0 8 0.566919 26 43 0 8 0.66212 26 45 0 8 0.729943 26 46 0 8 0.622297 26 47 0 8 0.435163 26 49 0 8 0.461272 26 50 0 8 0.442173 26 51 0 8 0.392477 26 52 0 8 0.431658 27 36 0 8 0.497123 27 37 0 8 0.380155 27 38 0 8 0.489647 27 39 0 8 0.895395 27 40 0 8 0.328791 27 41 0 8 0.617023 27 42 0 8 0.75119 27 43 0 8 0.851471 27 44 0 8 0.302735 27 45 0 8 0.863431 27 46 0 8 0.886168 27 47 0 8 0.519319 27 49 0 8 0.452502 27 50 0 8 0.457588 27 51 0 8 0.307413 27 52 0 8 0.398405 28 37 0 8 0.477635 28 38 0 8 0.568774 28 39 0 8 0.904991 28 40 0 8 0.423905 28 41 0 8 0.701776 28 42 0 8 0.762255 28 43 0 8 0.834363 28 44 0 8 0.398901 28 45 0 8 0.844972 28 46 0 8 0.823365 28 47 0 8 0.579187 28 48 0 8 0.332056 28 49 0 8 0.560595 28 50 0 8 0.516701 28 51 0 8 0.379059 28 52 0 8 0.44688 29 38 0 8 0.476671 29 39 0 8 0.777532 29 40 0 8 0.320041 29 41 0 8 0.535049 29 42 0 8 0.528236 29 43 0 8 0.546678 29 45 0 8 0.620339 29 46 0 8 0.453038 29 49 0 8 0.399774 29 50 0 8 0.369641 29 51 0 8 0.35175 29 52 0 8 0.4515 30 39 0 8 0.896059 30 40 0 8 0.576803 30 41 0 8 0.714206 30 42 0 8 0.716646 30 43 0 8 0.748061 30 44 0 8 0.428823 30 45 0 8 0.77883 30 46 0 8 0.662825 30 47 0 8 0.51404 30 48 0 8 0.417622 30 49 0 8 0.587445 30 50 0 8 0.562098 30 51 0 8 0.532827 30 52 0 8 0.63323 31 40 0 8 0.590034 31 41 0 8 0.731991 31 42 0 8 0.74888 31 43 0 8 0.756263 31 44 0 8 0.416583 31 45 0 8 0.775459 31 46 0 8 0.633295 31 47 0 8 0.502847 31 48 0 8 0.428529 31 49 0 8 0.539074 31 50 0 8 0.501616 31 51 0 8 0.494249 31 52 0 8 0.585852 32 41 0 8 0.609079 32 42 0 8 0.626223 32 43 0 8 0.638642 32 44 0 8 0.31713 32 45 0 8 0.698844 32 46 0 8 0.505004 32 47 0 8 0.398309 32 48 0 8 0.333778 32 49 0 8 0.463857 32 50 0 8 0.445191 32 51 0 8 0.451696 32 52 0 8 0.536862 33 42 0 8 0.715913 33 43 0 8 0.74738 33 44 0 8 0.381788 33 45 0 8 0.785484 33 46 0 8 0.634692 33 47 0 8 0.500831 33 48 0 8 0.403563 33 49 0 8 0.523937 33 50 0 8 0.495926 33 51 0 8 0.492496 33 52 0 8 0.574988 34 43 0 8 0.527335 34 45 0 8 0.613255 34 46 0 8 0.382076 34 47 0 8 0.364241 34 48 0 8 0.340735 34 49 0 8 0.463619 34 50 0 8 0.442275 34 51 0 8 0.443077 34 52 0 8 0.518959 35 45 0 8 0.564614 35 46 0 8 0.365812 35 47 0 8 0.348926 35 48 0 8 0.335605 35 49 0 8 0.438371 35 50 0 8 0.429102 35 51 0 8 0.427167 35 52 0 8 0.494253 36 45 0 8 0.520407 36 49 0 8 0.364277 36 50 0 8 0.337452 36 51 0 8 0.347458 36 52 0 8 0.410887 37 49 0 8 0.305784 37 51 0 8 0.301234 37 52 0 8 0.353853 39 48 0 8 0.459595 39 49 0 8 0.593756 39 50 0 8 0.55722 39 51 0 8 0.433297 39 52 0 8 0.548905 40 49 0 8 0.486186 40 50 0 8 0.456331 40 51 0 8 0.435118 40 52 0 8 0.515023 41 50 0 8 0.307964 41 51 0 8 0.308716 41 52 0 8 0.374475 42 51 0 8 0.34302 42 52 0 8 0.434796 43 52 0 8 0.672029 END