PFRMAT RR TARGET T0472 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplccrr.th62.17.730_47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 MSGWYELSKSSNDQFKFVLKAGNGEVILTSELYTGKSGAMNGIESVQTNS PIEAR 4 13 0 8 0.0277148 4 14 0 8 0.026403 4 15 0 8 0.025836 4 16 0 8 0.068568 4 17 0 8 0.172855 4 18 0 8 0.304834 4 19 0 8 0.279471 4 20 0 8 0.24776 4 21 0 8 0.17214 4 22 0 8 0.141308 4 23 0 8 0.0595935 4 24 0 8 0.0811908 4 25 0 8 0.0449457 4 26 0 8 0.0312292 4 27 0 8 0.0236051 4 28 0 8 0.183491 4 29 0 8 0.144862 4 30 0 8 0.102296 4 31 0 8 0.0694709 4 32 0 8 0.0606005 4 33 0 8 0.0419139 4 34 0 8 0.0496682 4 35 0 8 0.0405397 4 36 0 8 0.058859 4 37 0 8 0.0373369 4 38 0 8 0.0434516 4 39 0 8 0.0604253 4 40 0 8 0.0402654 4 41 0 8 0.045905 4 42 0 8 0.0365863 4 43 0 8 0.0291257 4 44 0 8 0.0221701 4 45 0 8 0.0335726 4 46 0 8 0.0290903 4 47 0 8 0.0376301 4 48 0 8 0.0598626 4 49 0 8 0.0532339 4 50 0 8 0.0569855 4 51 0 8 0.0395267 4 52 0 8 0.0409207 5 14 0 8 0.0339464 5 15 0 8 0.0365893 5 16 0 8 0.137197 5 17 0 8 0.44761 5 18 0 8 0.476985 5 19 0 8 0.53978 5 20 0 8 0.311639 5 21 0 8 0.236418 5 22 0 8 0.112157 5 23 0 8 0.0821003 5 24 0 8 0.0921831 5 25 0 8 0.0463265 5 26 0 8 0.059502 5 27 0 8 0.0654098 5 28 0 8 0.315463 5 29 0 8 0.158463 5 30 0 8 0.143051 5 31 0 8 0.0690318 5 32 0 8 0.06751 5 33 0 8 0.0764506 5 34 0 8 0.0409395 5 35 0 8 0.0397158 5 36 0 8 0.0589841 5 37 0 8 0.0363238 5 38 0 8 0.0488034 5 39 0 8 0.134795 5 40 0 8 0.0401566 5 41 0 8 0.0416975 5 42 0 8 0.0704985 5 43 0 8 0.0688651 5 44 0 8 0.0322458 5 45 0 8 0.0552496 5 46 0 8 0.0856516 5 47 0 8 0.0402825 5 48 0 8 0.0481769 5 49 0 8 0.0508359 5 50 0 8 0.0940394 5 51 0 8 0.0376523 5 52 0 8 0.039595 6 15 0 8 0.0430687 6 16 0 8 0.164564 6 17 0 8 0.615827 6 18 0 8 0.594016 6 19 0 8 0.246078 6 20 0 8 0.101091 6 21 0 8 0.0642219 6 22 0 8 0.0587476 6 23 0 8 0.0832279 6 24 0 8 0.0436935 6 25 0 8 0.0285862 6 26 0 8 0.0457503 6 27 0 8 0.0670199 6 28 0 8 0.266614 6 29 0 8 0.385825 6 30 0 8 0.0708561 6 31 0 8 0.0521372 6 32 0 8 0.028201 6 33 0 8 0.0329214 6 39 0 8 0.0143076 6 41 0 8 0.0176864 6 42 0 8 0.0327821 6 43 0 8 0.0160767 6 45 0 8 0.0218394 6 46 0 8 0.0147337 6 49 0 8 0.023178 7 16 0 8 0.545655 7 17 0 8 0.803985 7 18 0 8 0.66439 7 19 0 8 0.132388 7 20 0 8 0.0773515 7 21 0 8 0.0987852 7 22 0 8 0.0631804 7 23 0 8 0.113093 7 24 0 8 0.0981216 7 25 0 8 0.198946 7 26 0 8 0.0778214 7 27 0 8 0.237942 7 28 0 8 0.636498 7 29 0 8 0.259279 7 30 0 8 0.122706 7 31 0 8 0.079597 7 32 0 8 0.0610037 7 33 0 8 0.0649694 7 34 0 8 0.0567574 7 35 0 8 0.0447598 7 36 0 8 0.0728305 7 38 0 8 0.0613541 7 39 0 8 0.211636 7 41 0 8 0.072285 7 42 0 8 0.0914623 7 43 0 8 0.0990475 7 45 0 8 0.0597634 7 46 0 8 0.0946806 7 47 0 8 0.0514615 7 49 0 8 0.0484717 7 50 0 8 0.0605328 7 52 0 8 0.0400791 8 17 0 8 0.656999 8 18 0 8 0.623039 8 19 0 8 0.0512319 8 20 0 8 0.0463105 8 21 0 8 0.0498439 8 23 0 8 0.0894417 8 24 0 8 0.0584335 8 25 0 8 0.0741824 8 26 0 8 0.0541858 8 27 0 8 0.119749 8 28 0 8 0.475169 8 29 0 8 0.393371 8 30 0 8 0.0653765 8 31 0 8 0.0648563 8 32 0 8 0.0695598 8 33 0 8 0.0376685 8 39 0 8 0.0624375 8 41 0 8 0.0514009 8 42 0 8 0.0602143 8 43 0 8 0.0364978 8 45 0 8 0.0469217 8 46 0 8 0.0223101 9 18 0 8 0.0539839 9 19 0 8 0.015733 9 23 0 8 0.0296588 9 24 0 8 0.020488 9 25 0 8 0.0526202 9 26 0 8 0.0231413 9 27 0 8 0.0415903 9 28 0 8 0.0859395 9 29 0 8 0.0722456 10 23 0 8 0.0253372 10 24 0 8 0.0405356 10 25 0 8 0.0330889 10 26 0 8 0.0197294 10 28 0 8 0.124899 10 29 0 8 0.0652193 11 21 0 8 0.013588 11 23 0 8 0.0381104 11 24 0 8 0.0592502 11 25 0 8 0.0296495 12 21 0 8 0.0223916 12 22 0 8 0.0236212 12 23 0 8 0.0170751 12 24 0 8 0.0136704 13 22 0 8 0.0274934 13 23 0 8 0.015429 13 24 0 8 0.0153104 13 28 0 8 0.0412844 13 29 0 8 0.0553954 13 30 0 8 0.0296694 13 31 0 8 0.0328075 13 32 0 8 0.0334533 13 33 0 8 0.0304365 13 49 0 8 0.0155633 13 50 0 8 0.0138276 13 51 0 8 0.01926 14 23 0 8 0.0261403 14 24 0 8 0.0190109 14 27 0 8 0.0362471 14 28 0 8 0.187802 14 29 0 8 0.109779 14 30 0 8 0.110325 14 31 0 8 0.157976 14 32 0 8 0.132539 14 33 0 8 0.0515731 14 34 0 8 0.0727752 14 35 0 8 0.0464921 14 39 0 8 0.0349538 14 45 0 8 0.0433269 14 49 0 8 0.0467706 14 50 0 8 0.033997 14 51 0 8 0.0501322 14 52 0 8 0.0410298 15 24 0 8 0.0539559 15 25 0 8 0.0549734 15 26 0 8 0.0688041 15 27 0 8 0.0686053 15 28 0 8 0.488974 15 29 0 8 0.147981 15 30 0 8 0.166966 15 31 0 8 0.10786 15 32 0 8 0.108139 15 33 0 8 0.0629853 15 34 0 8 0.0720496 15 35 0 8 0.0681107 15 36 0 8 0.076123 15 37 0 8 0.0461574 15 38 0 8 0.11734 15 39 0 8 0.119878 15 40 0 8 0.0495576 15 41 0 8 0.0656149 15 42 0 8 0.0616137 15 43 0 8 0.0735123 15 45 0 8 0.0872951 15 46 0 8 0.055159 15 47 0 8 0.0470849 15 49 0 8 0.0805865 15 50 0 8 0.0735578 15 51 0 8 0.0567457 15 52 0 8 0.0539649 16 25 0 8 0.0649687 16 26 0 8 0.0778807 16 27 0 8 0.112907 16 28 0 8 0.636027 16 29 0 8 0.489848 16 30 0 8 0.292437 16 31 0 8 0.13489 16 32 0 8 0.194213 16 33 0 8 0.0896119 16 34 0 8 0.0470769 16 35 0 8 0.0459975 16 36 0 8 0.0438949 16 38 0 8 0.0656427 16 39 0 8 0.0720629 16 41 0 8 0.037672 16 42 0 8 0.0560649 16 43 0 8 0.0448429 16 45 0 8 0.0452669 16 46 0 8 0.0408574 16 47 0 8 0.0286709 16 49 0 8 0.046979 16 50 0 8 0.0519066 16 51 0 8 0.0505728 16 52 0 8 0.0458116 17 26 0 8 0.138999 17 27 0 8 0.198243 17 28 0 8 0.783828 17 29 0 8 0.706442 17 30 0 8 0.365737 17 31 0 8 0.0920252 17 32 0 8 0.204721 17 33 0 8 0.136839 17 34 0 8 0.0437866 17 35 0 8 0.049203 17 36 0 8 0.045349 17 38 0 8 0.258116 17 39 0 8 0.173542 17 40 0 8 0.0406107 17 41 0 8 0.0898129 17 42 0 8 0.203701 17 43 0 8 0.105078 17 45 0 8 0.233263 17 46 0 8 0.114994 17 47 0 8 0.0255021 17 49 0 8 0.11355 17 50 0 8 0.0783211 17 52 0 8 0.0574175 18 27 0 8 0.301856 18 28 0 8 0.944412 18 29 0 8 0.691909 18 30 0 8 0.195438 18 31 0 8 0.100551 18 32 0 8 0.122934 18 33 0 8 0.0707643 18 34 0 8 0.07043 18 35 0 8 0.0624855 18 38 0 8 0.104766 18 39 0 8 0.148728 18 41 0 8 0.0660918 18 42 0 8 0.0756384 18 43 0 8 0.0722581 18 45 0 8 0.060215 18 46 0 8 0.0441036 18 49 0 8 0.0514743 18 52 0 8 0.0356652 19 28 0 8 0.740217 19 29 0 8 0.485275 19 30 0 8 0.150789 19 31 0 8 0.104955 19 32 0 8 0.0713084 19 33 0 8 0.115705 19 34 0 8 0.0674898 19 35 0 8 0.0694609 19 38 0 8 0.08963 19 39 0 8 0.133697 19 41 0 8 0.0788097 19 42 0 8 0.169477 19 43 0 8 0.184038 19 45 0 8 0.107689 19 46 0 8 0.180548 19 47 0 8 0.0471886 19 49 0 8 0.072803 19 50 0 8 0.0865447 19 52 0 8 0.0309634 20 29 0 8 0.131151 20 30 0 8 0.0660441 20 31 0 8 0.0611144 20 32 0 8 0.0331427 20 33 0 8 0.0562901 20 39 0 8 0.0445556 20 43 0 8 0.0435726 20 45 0 8 0.0405995 20 46 0 8 0.0401698 21 30 0 8 0.0293983 21 31 0 8 0.0176889 21 32 0 8 0.0188411 21 33 0 8 0.0472966 21 39 0 8 0.0916669 21 41 0 8 0.0170386 21 42 0 8 0.0408005 21 43 0 8 0.0963778 21 45 0 8 0.0522737 21 46 0 8 0.0895845 21 47 0 8 0.011554 21 49 0 8 0.0181211 21 50 0 8 0.0221029 21 51 0 8 0.011193 21 52 0 8 0.0254334 22 31 0 8 0.0195452 22 32 0 8 0.0311282 22 33 0 8 0.0488373 22 49 0 8 0.0351448 22 50 0 8 0.0444826 22 51 0 8 0.0144792 22 52 0 8 0.0338455 23 32 0 8 0.0567096 23 33 0 8 0.104949 23 34 0 8 0.0329348 23 35 0 8 0.0316808 23 38 0 8 0.0308353 23 39 0 8 0.0475705 23 41 0 8 0.0267255 23 45 0 8 0.0558701 23 48 0 8 0.0203873 23 49 0 8 0.0461263 23 50 0 8 0.0367711 23 51 0 8 0.0287555 23 52 0 8 0.0298002 24 33 0 8 0.152971 24 34 0 8 0.094387 24 35 0 8 0.107913 24 36 0 8 0.0861111 24 37 0 8 0.083038 24 38 0 8 0.0821843 24 39 0 8 0.0835071 24 40 0 8 0.0593255 24 41 0 8 0.0607695 24 42 0 8 0.0922624 24 45 0 8 0.0841181 24 46 0 8 0.0787399 24 47 0 8 0.0822296 24 48 0 8 0.0761768 24 49 0 8 0.0948303 24 50 0 8 0.114961 24 51 0 8 0.0716568 24 52 0 8 0.0771335 25 34 0 8 0.0889556 25 35 0 8 0.0690618 25 36 0 8 0.11905 25 37 0 8 0.0431421 25 38 0 8 0.109599 25 39 0 8 0.0867764 25 41 0 8 0.0430177 25 42 0 8 0.0562013 25 43 0 8 0.0334871 25 45 0 8 0.058483 25 46 0 8 0.0419827 25 47 0 8 0.0731123 25 48 0 8 0.0547923 25 49 0 8 0.0662931 25 50 0 8 0.0653799 25 51 0 8 0.0467247 25 52 0 8 0.0563093 26 35 0 8 0.0684287 26 36 0 8 0.0643821 26 37 0 8 0.0559179 26 38 0 8 0.0742286 26 39 0 8 0.0956037 26 41 0 8 0.0517446 26 42 0 8 0.0803531 26 43 0 8 0.11852 26 45 0 8 0.0675032 26 46 0 8 0.0986562 26 47 0 8 0.0554374 26 49 0 8 0.0727753 26 50 0 8 0.0779689 26 51 0 8 0.0477767 26 52 0 8 0.0557621 27 36 0 8 0.0619596 27 37 0 8 0.0581884 27 38 0 8 0.101211 27 39 0 8 0.159411 27 40 0 8 0.0472169 27 41 0 8 0.0742219 27 42 0 8 0.209535 27 43 0 8 0.350494 27 44 0 8 0.0376993 27 45 0 8 0.0964514 27 46 0 8 0.29546 27 47 0 8 0.0498981 27 49 0 8 0.0720798 27 50 0 8 0.0881405 27 51 0 8 0.0321301 27 52 0 8 0.042314 28 37 0 8 0.0788002 28 38 0 8 0.21988 28 39 0 8 0.491874 28 40 0 8 0.111659 28 41 0 8 0.142134 28 42 0 8 0.270425 28 43 0 8 0.200768 28 44 0 8 0.0379384 28 45 0 8 0.184077 28 46 0 8 0.181138 28 47 0 8 0.0846581 28 48 0 8 0.0491867 28 49 0 8 0.0923967 28 50 0 8 0.108614 28 51 0 8 0.0499687 28 52 0 8 0.0622242 29 38 0 8 0.170682 29 39 0 8 0.134798 29 40 0 8 0.0824951 29 41 0 8 0.088836 29 42 0 8 0.125057 29 43 0 8 0.0921149 29 45 0 8 0.07064 29 46 0 8 0.0656878 29 49 0 8 0.0633124 29 50 0 8 0.0774327 29 51 0 8 0.0306628 29 52 0 8 0.041856 30 39 0 8 0.135269 30 40 0 8 0.09615 30 41 0 8 0.123368 30 42 0 8 0.224515 30 43 0 8 0.164784 30 44 0 8 0.0448613 30 45 0 8 0.118376 30 46 0 8 0.134582 30 47 0 8 0.0551233 30 48 0 8 0.0340327 30 49 0 8 0.0878357 30 50 0 8 0.0880629 30 51 0 8 0.0374274 30 52 0 8 0.0361863 31 40 0 8 0.0772116 31 41 0 8 0.121601 31 42 0 8 0.148076 31 43 0 8 0.0962147 31 44 0 8 0.0441582 31 45 0 8 0.108615 31 46 0 8 0.0845675 31 47 0 8 0.0627296 31 48 0 8 0.0332994 31 49 0 8 0.0750981 31 50 0 8 0.0798064 31 51 0 8 0.0418566 31 52 0 8 0.0418075 32 41 0 8 0.0601364 32 42 0 8 0.143326 32 43 0 8 0.0903166 32 44 0 8 0.0283038 32 45 0 8 0.0943834 32 46 0 8 0.092586 32 47 0 8 0.0322138 32 48 0 8 0.0261681 32 49 0 8 0.0622258 32 50 0 8 0.0582711 32 51 0 8 0.0302321 32 52 0 8 0.0516104 33 42 0 8 0.143699 33 43 0 8 0.177547 33 44 0 8 0.0148871 33 45 0 8 0.142341 33 46 0 8 0.163081 33 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